A nowcasting framework for correcting for reporting delays in malaria surveillance.


Journal

PLoS computational biology
ISSN: 1553-7358
Titre abrégé: PLoS Comput Biol
Pays: United States
ID NLM: 101238922

Informations de publication

Date de publication:
11 2021
Historique:
received: 29 03 2021
accepted: 18 10 2021
revised: 09 12 2021
pubmed: 17 11 2021
medline: 31 12 2021
entrez: 16 11 2021
Statut: epublish

Résumé

Time lags in reporting to national surveillance systems represent a major barrier for the control of infectious diseases, preventing timely decision making and resource allocation. This issue is particularly acute for infectious diseases like malaria, which often impact rural and remote communities the hardest. In Guyana, a country located in South America, poor connectivity among remote malaria-endemic regions hampers surveillance efforts, making reporting delays a key challenge for elimination. Here, we analyze 13 years of malaria surveillance data, identifying key correlates of time lags between clinical cases occurring and being added to the central data system. We develop nowcasting methods that use historical patterns of reporting delays to estimate occurred-but-not-reported monthly malaria cases. To assess their performance, we implemented them retrospectively, using only information that would have been available at the time of estimation, and found that they substantially enhanced the estimates of malaria cases. Specifically, we found that the best performing models achieved up to two-fold improvements in accuracy (or error reduction) over known cases in selected regions. Our approach provides a simple, generalizable tool to improve malaria surveillance in endemic countries and is currently being implemented to help guide existing resource allocation and elimination efforts.

Identifiants

pubmed: 34784353
doi: 10.1371/journal.pcbi.1009570
pii: PCOMPBIOL-D-21-00590
pmc: PMC8659367
doi:

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

e1009570

Subventions

Organisme : NIGMS NIH HHS
ID : R01 GM130668
Pays : United States
Organisme : NIGMS NIH HHS
ID : R35 GM124715
Pays : United States
Organisme : NIGMS NIH HHS
ID : U54 GM088558
Pays : United States

Déclaration de conflit d'intérêts

The authors have declared that no competing interests exist. Author Sharon Jones-Weekes was unable to confirm their authorship contributions. On their behalf, the corresponding author has reported their contributions to the best of their knowledge.

Références

Proc Natl Acad Sci U S A. 2015 Nov 24;112(47):14473-8
pubmed: 26553980
Biom J. 2015 Nov;57(6):1051-67
pubmed: 26250543
Sci Data. 2020 Apr 3;7(1):109
pubmed: 32246091
PLoS Biol. 2016 Mar 02;14(3):e1002380
pubmed: 26934361
JMIR Public Health Surveill. 2016 May 06;2(1):e20
pubmed: 27227156
J Vector Borne Dis. 2018 Jan-Mar;55(1):1-8
pubmed: 29916441
Biometrics. 2020 Sep;76(3):789-798
pubmed: 31737902
PLoS Comput Biol. 2020 Apr 6;16(4):e1007735
pubmed: 32251464
Elife. 2020 May 12;9:
pubmed: 32394893
Stat Med. 2019 Sep 30;38(22):4363-4377
pubmed: 31292995
Int J Health Geogr. 2020 Mar 3;19(1):4
pubmed: 32126997
PLoS Negl Trop Dis. 2016 Jun 15;10(6):e0004761
pubmed: 27304062
Nature. 2018 Jan 18;553(7688):333-336
pubmed: 29320477
Nat Commun. 2019 Jan 11;10(1):147
pubmed: 30635558

Auteurs

Tigist F Menkir (TF)

Center for Communicable Disease Dynamics, Department of Epidemiology, Harvard T.H. Chan School of Public Health, Harvard University, Boston, Massachusetts, United States of America.

Horace Cox (H)

Vector Control Services, Ministry of Public Health, Georgetown, Guyana.

Canelle Poirier (C)

Computational Health Informatics Program, Boston Children's Hospital, Boston Massachusetts, United States of America.
Department of Pediatrics, Harvard Medical School, Boston, Massachusetts, United States of America.

Melanie Saul (M)

Vector Control Services, Ministry of Public Health, Georgetown, Guyana.

Sharon Jones-Weekes (S)

Vector Control Services, Ministry of Public Health, Georgetown, Guyana.

Collette Clementson (C)

Vector Control Services, Ministry of Public Health, Georgetown, Guyana.

Pablo M de Salazar (P)

Center for Communicable Disease Dynamics, Department of Epidemiology, Harvard T.H. Chan School of Public Health, Harvard University, Boston, Massachusetts, United States of America.

Mauricio Santillana (M)

Center for Communicable Disease Dynamics, Department of Epidemiology, Harvard T.H. Chan School of Public Health, Harvard University, Boston, Massachusetts, United States of America.
Computational Health Informatics Program, Boston Children's Hospital, Boston Massachusetts, United States of America.
Department of Pediatrics, Harvard Medical School, Boston, Massachusetts, United States of America.

Caroline O Buckee (CO)

Center for Communicable Disease Dynamics, Department of Epidemiology, Harvard T.H. Chan School of Public Health, Harvard University, Boston, Massachusetts, United States of America.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH