Binary-QSAR guided virtual screening of FDA approved drugs and compounds in clinical investigation against SARS-CoV-2 main protease.

SARS-CoV-2 drug repurposing virtual screening Binary QSAR

Journal

Turkish journal of biology = Turk biyoloji dergisi
ISSN: 1303-6092
Titre abrégé: Turk J Biol
Pays: Turkey
ID NLM: 9434434

Informations de publication

Date de publication:
2021
Historique:
received: 28 06 2021
accepted: 06 08 2021
entrez: 22 11 2021
pubmed: 23 11 2021
medline: 23 11 2021
Statut: epublish

Résumé

With the emergence of the new SARS-CoV-2 virus, drug repurposing studies have gained substantial importance. Combined with the efficacy of recent improvements in ligand- and target-based virtual screening approaches, virtual screening has become faster and more productive than ever. In the current study, an FDA library of approved drugs and compounds under clinical investigation were screened for their antiviral activity using the antiviral therapeutic activity binary QSAR model of the MetaCore/MetaDrug platform. Among 6733-compound collection, we found 370 compounds with a normalized therapeutic activity value greater than a cutoff of 0.75. Only these selected compounds were used for molecular docking studies against the SARS-CoV-2 main protease (M

Identifiants

pubmed: 34803447
doi: 10.3906/biy-2106-61
pmc: PMC8573836
doi:

Types de publication

Journal Article

Langues

eng

Pagination

459-468

Informations de copyright

Copyright © 2021 The Author(s).

Déclaration de conflit d'intérêts

CONFLICT OF INTEREST: The authors declare that there is not any conflict of interest.

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Auteurs

Lalehan Oktay (L)

Computational Biology and Molecular Simulations Laboratory, Department of Biophysics, School of Medicine, Bahçeşehir University, İstanbul Turkey.

Ece Erdemoğlu (E)

Computational Biology and Molecular Simulations Laboratory, Department of Biophysics, School of Medicine, Bahçeşehir University, İstanbul Turkey.
School of Medicine, Mersin University, Mersin Turkey.

İlayda Tolu (İ)

Computational Biology and Molecular Simulations Laboratory, Department of Biophysics, School of Medicine, Bahçeşehir University, İstanbul Turkey.

Yeşim Yumak (Y)

Computational Biology and Molecular Simulations Laboratory, Department of Biophysics, School of Medicine, Bahçeşehir University, İstanbul Turkey.
Faculty of Science and Letters, Tokat Gaziosmanpaşa University, Tokat Turkey.

Ayşenur Özcan (A)

Computational Biology and Molecular Simulations Laboratory, Department of Biophysics, School of Medicine, Bahçeşehir University, İstanbul Turkey.
Faculty of Medicine, İstanbul Medeniyet University, İstanbul Turkey.

Elif Acar (E)

Computational Biology and Molecular Simulations Laboratory, Department of Biophysics, School of Medicine, Bahçeşehir University, İstanbul Turkey.
Faculty of Medicine, İstanbul Medeniyet University, İstanbul Turkey.

Şehriban Büyükkiliç (Ş)

Computational Biology and Molecular Simulations Laboratory, Department of Biophysics, School of Medicine, Bahçeşehir University, İstanbul Turkey.
Faculty of Science, Necmettin Erbakan University, Konya Turkey.

Alpsu Olkan (A)

Computational Biology and Molecular Simulations Laboratory, Department of Biophysics, School of Medicine, Bahçeşehir University, İstanbul Turkey.
School of Medicine, Bahçeşehir University, İstanbul Turkey.

Serdar Durdaği (S)

Computational Biology and Molecular Simulations Laboratory, Department of Biophysics, School of Medicine, Bahçeşehir University, İstanbul Turkey.

Classifications MeSH