Decay of similarity across tropical forest communities: integrating spatial distance with soil nutrients.
French Guiana
community assembly
dispersion
environmental filtering
metabarcoding
nutrients
scale-dependency
soil biodiversity
Journal
Ecology
ISSN: 1939-9170
Titre abrégé: Ecology
Pays: United States
ID NLM: 0043541
Informations de publication
Date de publication:
02 2022
02 2022
Historique:
revised:
14
09
2021
received:
15
04
2021
accepted:
28
09
2021
pubmed:
25
11
2021
medline:
1
4
2022
entrez:
24
11
2021
Statut:
ppublish
Résumé
Understanding the mechanisms that drive the change of biotic assemblages over space and time is the main quest of community ecology. Assessing the relative importance of dispersal and environmental species selection in a range of organismic sizes and motilities has been a fruitful strategy. A consensus for whether spatial and environmental distances operate similarly across spatial scales and taxa, however, has yet to emerge. We used censuses of four major groups of organisms (soil bacteria, fungi, ground insects, and trees) at two observation scales (1-m
Substances chimiques
Soil
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
e03599Informations de copyright
© 2021 The Authors. Ecology published by Wiley Periodicals LLC on behalf of Ecological Society of America.
Références
Astorga, A., J. Oksanen, M. Luoto, J. Soininen, R. Virtanen, and T. Muotka. 2012. Distance decay of similarity in freshwater communities: do macro- and microorganisms follow the same rules?: Decay of similarity in freshwater communities. Global Ecology and Biogeography 21:365-375.
Bahram, M., U. Kõljalg, P.-E. Courty, A. G. Diédhiou, R. Kjøller, S. Põlme, M. Ryberg, V. Veldre, and L. Tedersoo. 2013. The distance decay of similarity in communities of ectomycorrhizal fungi in different ecosystems and scales. Journal of Ecology 101:1335-1344.
Baselga, A., and C. D. L. Orme. 2012. betapart: An R package for the study of beta diversity. Methods in Ecology and Evolution 3:808-812.
Beisner, B. E., P. R. Peres-Neto, E. S. Lindström, A. Barnett, and M. L. Longhi. 2006. The role of environmental and spatial processes in structuring lake communities from bacteria to fish. Ecology 87:2985-2991.
Bryant, J. A., C. Lamanna, H. Morlon, A. J. Kerkhoff, B. J. Enquist, and J. L. Green. 2008. Microbes on mountainsides: Contrasting elevational patterns of bacterial and plant diversity. Proceedings of the National Academy of Sciences of the United States of America 105:11505-11511.
Camenzind, T., S. Hättenschwiler, K. K. Treseder, A. Lehmann, and M. C. Rillig. 2018. Nutrient limitation of soil microbial processes in tropical forests. Ecological Monographs 88:4-21.
Charles-Dominique, P. 2001. Relationships between seed dispersal and behavioural ecology. Pages 191-196 in F. Bongers, P. Charles-Dominique, P.-M. Forget, and M. Théry, editors. Nouragues: dynamics and plant-animal interactions in a neotropical rainforest. Springer Netherlands, Dordrecht, The Netherlands.
Chase, J. M. 2014. Spatial scale resolves the niche versus neutral theory debate. Journal of Vegetation Science 25:319-322.
Chase, J. M., B. J. McGill, D. J. McGlinn, F. May, S. A. Blowes, X. Xiao, T. M. Knight, O. Purschke, and N. J. Gotelli. 2018. Embracing scale-dependence to achieve a deeper understanding of biodiversity and its change across communities. Ecology Letters 21:1737-1751.
Condit, R., et al. 2002. Beta-diversity in tropical forest trees. Science 295:666-669.
Fierer, N., and R. B. Jackson. 2006. The diversity and biogeography of soil bacterial communities. Proceedings of the National Academy of Sciences of the United States of America 103:626-631.
Gelmi-Candusso, T. A., E. W. Heymann, and K. Heer. 2017. Effects of zoochory on the spatial genetic structure of plant populations. Molecular Ecology 26:5896-5910.
Gómez-Rodríguez, C., and A. Baselga. 2018. Variation among European beetle taxa in patterns of distance decay of similarity suggests a major role of dispersal processes. Ecography 41:1825-1834.
Grau, O., et al. 2017. Nutrient-cycling mechanisms other than the direct absorption from soil may control forest structure and dynamics in poor Amazonian soils. Scientific Reports 7:45017.
Green, J. L., A. J. Holmes, M. Westoby, I. Oliver, D. Briscoe, M. Dangerfield, M. Gillings, and A. J. Beattie. 2004. Spatial scaling of microbial eukaryote diversity. Nature 432:747-750.
Guillot, G., and F. Rousset. 2013. Dismantling the Mantel tests. Methods in Ecology and Evolution 4:336-344.
Horner-Devine, M. C., M. Lage, J. B. Hughes, and B. J. M. Bohannan. 2004. A taxa-area relationship for bacteria. Nature 432:750-753.
Hsieh, T. C., K. H. Ma, and A. Chao. 2016. iNEXT: an R package for rarefaction and extrapolation of species diversity (Hill numbers). Methods in Ecology and Evolution 7:1451-1456.
John, R., et al. 2007. Soil nutrients influence spatial distributions of tropical tree species. Proceedings of the National Academy of Sciences of the United States of America 104:864-869.
Jucker, T., B. Bongalov, D. F. R. P. Burslem, R. Nilus, M. Dalponte, S. L. Lewis, O. L. Phillips, L. Qie, and D. A. Coomes. 2018. Topography shapes the structure, composition and function of tropical forest landscapes. Ecology Letters 21:989-1000.
Lamarre, G. P. A., B. Hérault, P. V. A. Fine, V. Vedel, R. Lupoli, I. Mesones, and C. Baraloto. 2016. Taxonomic and functional composition of arthropod assemblages across contrasting Amazonian forests. Journal of Animal Ecology 85:227-239.
Lamb, P. D., E. Hunter, J. K. Pinnegar, S. Creer, R. G. Davies, and M. I. Taylor. 2019. How quantitative is metabarcoding: a meta-analytical approach. Molecular Ecology 28:420-430.
Legendre, P., M.-J. Fortin, and D. Borcard. 2015. Should the Mantel test be used in spatial analysis? Methods in Ecology and Evolution 6:1239-1247.
Leibold, M. A., et al. 2004. The metacommunity concept: a framework for multi-scale community ecology. Ecology Letters 7:601-613.
Lindo, Z., and N. N. Winchester. 2009. Spatial and environmental factors contributing to patterns in arboreal and terrestrial oribatid mite diversity across spatial scales. Oecologia 160:817-825.
Lindström, E. S., and S. Langenheder. 2012. Local and regional factors influencing bacterial community assembly. Environmental Microbiology Reports 4:1-9.
Luan, L., Y. Jiang, M. Cheng, F. Dini-Andreote, Y. Sui, Q. Xu, S. Geisen, and B. Sun. 2020. Organism body size structures the soil microbial and nematode community assembly at a continental and global scale. Nature Communications 11:6406.
Martiny, J. B. H., et al. 2006. Microbial biogeography: putting microorganisms on the map. Nature Reviews Microbiology 4:102-112.
Nekola, J. C., and B. J. McGill. 2014. Scale dependency in the functional form of the distance decay relationship. Ecography 37:309-320.
Nekola, J. C., and P. S. White. 1999. The distance decay of similarity in biogeography and ecology. Journal of Biogeography 26:867-878.
Novotny, V., et al. 2007. Low beta diversity of herbivorous insects in tropical forests. Nature 448:692-695.
Peay, K. G., C. Baraloto, and P. V. Fine. 2013. Strong coupling of plant and fungal community structure across western Amazonian rainforests. ISME Journal 7:1852-1861.
Peay, K. G., M. Garbelotto, and T. D. Bruns. 2010. Evidence of dispersal limitation in soil microorganisms: Isolation reduces species richness on mycorrhizal tree islands. Ecology 91:3631-3640.
Peguero, G., et al. 2019. Nutrient scarcity strengthens soil fauna control over leaf litter decomposition in tropical rainforests. Proceedings of the Royal Society B: Biological Sciences 286:20191300.
Peguero, G., and M. Ferrin. 2021. Data & Code for ‘Decay of similarity across tropical forest communities: integrating spatial distance with soil nutrients'. Figshare, Data Set. https://doi.org/10.6084/m9.figshare.16615873.v1
Powell, J. R., S. Karunaratne, C. D. Campbell, H. Yao, L. Robinson, and B. K. Singh. 2015. Deterministic processes vary during community assembly for ecologically dissimilar taxa. Nature Communications 6:8444.
R Core Team. 2020. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria.
Shade, A., et al. 2018. Macroecology to unite all life, large and small. Trends in Ecology & Evolution 33:731-744.
Soininen, J., R. McDonald, and H. Hillebrand. 2007. The distance decay of similarity in ecological communities. Ecography 30:3-12.
Soong, J. L., et al. 2020. Soil properties explain tree growth and mortality, but not biomass, across phosphorus-depleted tropical forests. Scientific Reports 10:2302.
Székely, A. J., and S. Langenheder. 2014. The importance of species sorting differs between habitat generalists and specialists in bacterial communities. FEMS Microbiology Ecology 87:102-112.
Tedersoo, L., et al. 2016. Tree diversity and species identity effects on soil fungi, protists and animals are context dependent. ISME Journal 10:346-362.
Tuomisto, H., K. Ruokolainen, and M. Yli-Halla. 2003. Dispersal, environment, and floristic variation of western Amazonian forests. Science (New York N.Y.) 299:241-244.
Urbina, I., et al. 2021. High foliar K and P resorption efficiencies in old-growth tropical forests growing on nutrient-poor soils. Ecology and Evolution 11:8969-8982. https://doi.org/10.1002/ece3.7734
Van Langenhove, L. 2020. Towards a better understanding of nutrient cycling in the lowland tropical rainforests of French Guiana. University of Antwerp, Antwerp, Belgium. https://anet.uantwerpen.be/desktop/uantwerpen
Vellend, M. 2017. The theory of ecological communities. Princeton University Press, Princeton, New Jersey, USA. https://press.princeton.edu
Vleminckx, J., et al. 2019. Coordinated community structure among trees, fungi and invertebrate groups in Amazonian rainforests. Scientific Reports 9:11337.
Weintraub, S. R., P. G. Taylor, S. Porder, C. C. Cleveland, G. P. Asner, and A. R. Townsend. 2015. Topographic controls on soil nitrogen availability in a lowland tropical forest. Ecology 96:1561-1574.
Zhang, K., S. Lin, Y. Ji, C. Yang, X. Wang, C. Yang, H. Wang, H. Jiang, R. D. Harrison, and D. W. Yu. 2016. Plant diversity accurately predicts insect diversity in two tropical landscapes. Molecular Ecology 25:4407-4419.
Zinger, L., et al. 2019. Body size determines soil community assembly in a tropical forest. Molecular Ecology 28:528-543.