Temporal and sequential order of nonoverlapping gene networks unraveled in mated female Drosophila.
Journal
Life science alliance
ISSN: 2575-1077
Titre abrégé: Life Sci Alliance
Pays: United States
ID NLM: 101728869
Informations de publication
Date de publication:
02 2022
02 2022
Historique:
received:
12
05
2021
revised:
11
11
2021
accepted:
12
11
2021
entrez:
30
11
2021
pubmed:
1
12
2021
medline:
29
3
2022
Statut:
epublish
Résumé
In this study, we reanalyzed available datasets of gene expression changes in female Drosophila head induced by mating. Mated females present metabolic phenotypic changes and display behavioral characteristics that are not observed in virgin females, such as repulsion to male sexual aggressiveness, fidelity to food spots selected for oviposition, and restriction to the colonization of new niches. We characterize gene networks that play a role in female brain plasticity after mating using AMINE, a novel algorithm to find dysregulated modules of interacting genes. The uncovered networks of altered genes revealed a strong specificity for each successive period of life span after mating in the female head, with little conservation between them. This finding highlights a temporal order of recruitment of waves of interconnected genes which are apparently transiently modified: the first wave disappears before the emergence of the second wave in a reversible manner and ends with few consolidated gene expression changes at day 20. This analysis might document an extended field of a programmatic control of female phenotypic traits by male seminal fluid.
Identifiants
pubmed: 34844981
pii: 5/2/e202101119
doi: 10.26508/lsa.202101119
pmc: PMC8645335
pii:
doi:
Substances chimiques
Drosophila Proteins
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Informations de copyright
© 2021 Pasquier et al.
Références
Science. 2016 Jan 22;351(6271):397-400
pubmed: 26721680
Nat Rev Genet. 2016 Dec;17(12):733-743
pubmed: 27694809
BMC Syst Biol. 2017 Mar 14;11(Suppl 2):8
pubmed: 28361699
Neurobiol Learn Mem. 1995 Mar;63(2):181-91
pubmed: 7663892
Curr Biol. 2014 Mar 31;24(7):731-7
pubmed: 24631240
Proc Natl Acad Sci U S A. 2008 Sep 16;105(37):13912-7
pubmed: 18725632
BMC Bioinformatics. 2010 Jan 13;11:26
pubmed: 20070902
Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9929-33
pubmed: 12897240
PLoS Comput Biol. 2015 Apr 08;11(4):e1004120
pubmed: 25853560
Curr Biol. 2004 Aug 24;14(16):1509-14
pubmed: 15324670
Curr Opin Insect Sci. 2016 Feb;13:106-113
pubmed: 27436559
Curr Biol. 2006 Apr 4;16(7):692-6
pubmed: 16581515
Curr Biol. 2005 Sep 20;15(18):1690-4
pubmed: 16169493
Science. 2003 Oct 10;302(5643):296-9
pubmed: 14551438
Nat Genet. 2015 Feb;47(2):106-14
pubmed: 25501392
Am Nat. 2000 Jun;155(6):820-827
pubmed: 10805647
Sci Rep. 2014 Nov 19;4:7119
pubmed: 25406576
Proc Biol Sci. 2007 May 7;274(1614):1211-7
pubmed: 17311779
Physiol Behav. 2017 Oct 15;180:146-158
pubmed: 28851647
Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9643-4
pubmed: 12913117
J Proteome Res. 2019 Feb 1;18(2):623-632
pubmed: 30450911
Proc Natl Acad Sci U S A. 2004 Mar 2;101(9):2981-6
pubmed: 14973197
BMC Dev Biol. 2008 Dec 08;8:114
pubmed: 19063748
Bioinformatics. 2012 Sep 15;28(18):i451-i457
pubmed: 22962466
J Hered. 2017 Oct 30;108(7):740-753
pubmed: 29036644
Nat Neurosci. 2014 May;17(5):667-9
pubmed: 24728267
Nature. 2006 May 25;441(7092):469-74
pubmed: 16724059
Curr Biol. 2015 Oct 19;25(20):2621-30
pubmed: 26412135
Genome Biol. 2014;15(12):550
pubmed: 25516281
PLoS Negl Trop Dis. 2016 Feb 22;10(2):e0004451
pubmed: 26901677
Front Genet. 2019 Mar 05;10:155
pubmed: 30891064
Insect Mol Biol. 2009 Aug;18(4):465-75
pubmed: 19453766
Curr Biol. 2005 Feb 22;15(4):316-21
pubmed: 15723791
J Biol Rhythms. 2016 Dec;31(6):551-567
pubmed: 27658900
Dev Cell. 2008 Nov;15(5):714-24
pubmed: 19000836
Exp Gerontol. 2001 Apr;36(4-6):695-711
pubmed: 11295509
Mol Ecol. 2011 Apr;20(7):1347-63
pubmed: 21342300
J Evol Biol. 2009 Mar;22(3):564-70
pubmed: 19170815
Nucleic Acids Res. 2019 Jul 2;47(W1):W242-W247
pubmed: 31114913
Bioinformatics. 2018 Jul 1;34(13):2322-2324
pubmed: 29949954
Proc Biol Sci. 2010 Dec 7;277(1700):3649-57
pubmed: 20573620
Genome. 2004 Oct;47(5):900-10
pubmed: 15499404
BMC Genomics. 2010 Oct 11;11:558
pubmed: 20937114
BMC Syst Biol. 2007 Jan 26;1:8
pubmed: 17408515
G3 (Bethesda). 2020 Mar 5;10(3):967-983
pubmed: 31907222
Dev Biol. 2001 Mar 1;231(1):265-78
pubmed: 11180967
Genome Res. 2003 Nov;13(11):2498-504
pubmed: 14597658
BMC Syst Biol. 2014;8 Suppl 4:S2
pubmed: 25522063
Nucleic Acids Res. 2013 Jan;41(2):e42
pubmed: 23161673
Proc Natl Acad Sci U S A. 2006 Jul 5;103(27):10358-10363
pubmed: 16798875
Sci Rep. 2018 Jan 11;8(1):433
pubmed: 29323246
BMC Genomics. 2009 May 12;10:220
pubmed: 19435510
Proc Biol Sci. 2011 Feb 7;278(1704):424-31
pubmed: 20739318
Annu Rev Entomol. 2011;56:21-40
pubmed: 20868282
Front Cell Infect Microbiol. 2013 Nov 19;3:82
pubmed: 24312902
Genetics. 2008 Jul;179(3):1395-408
pubmed: 18562649
BMC Med Genomics. 2011 Apr 14;4:34
pubmed: 21489305
Bioinformatics. 2017 Jul 15;33(14):i170-i179
pubmed: 28881978
Bioinformatics. 2010 Jan 1;26(1):139-40
pubmed: 19910308
PLoS One. 2012;7(1):e30857
pubmed: 22303464
BioData Min. 2013 Oct 15;6(1):17
pubmed: 24128261
Proc Natl Acad Sci U S A. 2021 Jan 5;118(1):
pubmed: 33443193
Mol Ecol. 2007 Nov;16(22):4837-48
pubmed: 17927707
BMC Genomics. 2015 Jul 31;16:563
pubmed: 26227994
Trends Ecol Evol. 2010 Feb;25(2):81-9
pubmed: 19748700
J Biosci. 2009 Oct;34(4):543-51
pubmed: 19920340
BMC Bioinformatics. 2007 Feb 01;8:35
pubmed: 17270037
Insect Mol Biol. 2010 Apr;19(2):153-62
pubmed: 20002808
Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9923-8
pubmed: 12893873
G3 (Bethesda). 2013 May 20;3(5):827-40
pubmed: 23550122
Mol Syst Biol. 2007;3:140
pubmed: 17940530
Behav Ecol. 2009 Sep;20(5):1007-1014
pubmed: 22476212
Nature. 2008 Jan 3;451(7174):33-7
pubmed: 18066048
Annu Rev Genet. 2016 Nov 23;50:539-570
pubmed: 27732790
PLoS Genet. 2016 Jun 16;12(6):e1006123
pubmed: 27310920
KDD. 2016 Aug;2016:855-864
pubmed: 27853626
Cell Mol Life Sci. 2003 Aug;60(8):1689-704
pubmed: 14504657
Mol Cell Endocrinol. 2009 Feb 5;299(1):39-50
pubmed: 18682271
G3 (Bethesda). 2021 Apr 23;11(3):
pubmed: 33890615
Bioinformatics. 2011 May 1;27(9):1290-8
pubmed: 21414987
Proc Natl Acad Sci U S A. 2004 Apr 20;101(16):6261-6
pubmed: 15071179
Proc Biol Sci. 2001 Jan 22;268(1463):175-80
pubmed: 11209888
Bioinformatics. 2007 Apr 1;23(7):850-8
pubmed: 17267429
Gerontology. 2008;54(3):160-7
pubmed: 18367827
PLoS One. 2007 Oct 03;2(10):e980
pubmed: 17912357
Curr Biol. 2012 Jul 10;22(13):1155-65
pubmed: 22658598
Nature. 2011 Mar 24;471(7339):473-9
pubmed: 21179090
Nat Genet. 2007 Jun;39(6):715-20
pubmed: 17534367
Genome Res. 2012 Feb;22(2):398-406
pubmed: 21908773
BMC Genomics. 2010 Oct 06;11:541
pubmed: 20925960
Bioinformatics. 2010 Apr 15;26(8):1129-30
pubmed: 20189939
Nature. 2014 Aug 28;512(7515):393-9
pubmed: 24670639
BMC Genomics. 2014 Oct 23;15:927
pubmed: 25344338
Nat Methods. 2017 Apr;14(4):417-419
pubmed: 28263959
Bioinformatics. 2002;18 Suppl 1:S233-40
pubmed: 12169552
Nucleic Acids Res. 2017 Jan 4;45(D1):D362-D368
pubmed: 27924014
Proc Biol Sci. 2010 Jan 7;277(1678):65-70
pubmed: 19793753
Epigenetics. 2015;10(8):762-71
pubmed: 26237076
Genome Med. 2017 May 26;9(1):48
pubmed: 28549478
J Evol Biol. 2009 May;22(5):964-73
pubmed: 19228270
BMC Bioinformatics. 2004 Jul 23;5:100
pubmed: 15272936
PLoS One. 2014 Aug 22;9(8):e104993
pubmed: 25148538
BMC Genomics. 2008 May 19;9:232
pubmed: 18489784
Trends Ecol Evol. 1998 Feb 1;13(2):77-81
pubmed: 21238209
BMC Syst Biol. 2010 Apr 21;4:47
pubmed: 20406493
Dev Cell. 2011 Jul 19;21(1):29-31
pubmed: 21763605
Dev Comp Immunol. 2008;32(1):50-60
pubmed: 17537510
Genetics. 2011 Jan;187(1):157-69
pubmed: 20980240
Bioinformatics. 2009 May 1;25(9):1158-64
pubmed: 19297352
Science. 2016 Jan 1;351(6268):aac6633
pubmed: 26722000
Proc Natl Acad Sci U S A. 2008 Dec 9;105(49):19390-5
pubmed: 19036921