OME-NGFF: a next-generation file format for expanding bioimaging data-access strategies.
Journal
Nature methods
ISSN: 1548-7105
Titre abrégé: Nat Methods
Pays: United States
ID NLM: 101215604
Informations de publication
Date de publication:
12 2021
12 2021
Historique:
received:
14
04
2021
accepted:
19
10
2021
pubmed:
1
12
2021
medline:
8
1
2022
entrez:
30
11
2021
Statut:
ppublish
Résumé
The rapid pace of innovation in biological imaging and the diversity of its applications have prevented the establishment of a community-agreed standardized data format. We propose that complementing established open formats such as OME-TIFF and HDF5 with a next-generation file format such as Zarr will satisfy the majority of use cases in bioimaging. Critically, a common metadata format used in all these vessels can deliver truly findable, accessible, interoperable and reusable bioimaging data.
Identifiants
pubmed: 34845388
doi: 10.1038/s41592-021-01326-w
pii: 10.1038/s41592-021-01326-w
pmc: PMC8648559
mid: EMS137146
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, Non-P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Pagination
1496-1498Subventions
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/R015384/1
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/P027032/1
Pays : United Kingdom
Organisme : Wellcome Trust (Wellcome)
ID : 212962/Z/18/Z
Organisme : Wellcome Trust
Pays : United Kingdom
Organisme : Wellcome Trust
ID : 212962
Pays : United Kingdom
Informations de copyright
© 2021. The Author(s).
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