Target specificity of selective bioactive compounds in blocking α-dystroglycan receptor to suppress Lassa virus infection: an
LASV infection
bioactive compounds
molecular docking
molecular dynamic simulations
target specificity
α-dystroglycan receptor
Journal
Journal of biomedical research
ISSN: 1674-8301
Titre abrégé: J Biomed Res
Pays: China
ID NLM: 101551157
Informations de publication
Date de publication:
06 Nov 2021
06 Nov 2021
Historique:
entrez:
3
12
2021
pubmed:
4
12
2021
medline:
4
12
2021
Statut:
ppublish
Résumé
Lassa hemorrhagic fever, caused by Lassa mammarenavirus (LASV) infection, accumulates up to 5000 deaths every year. Currently, there is no vaccine available to combat this disease. In this study, a library of 200 bioactive compounds was virtually screened to study their drug-likeness with the capacity to block the α-dystroglycan (α-DG) receptor and prevent LASV influx. Following rigorous absorption, distribution, metabolism, and excretion (ADME) and quantitative structure-activity relationship (QSAR) profiling, molecular docking was conducted with the top ligands against the α-DG receptor. The compounds chrysin, reticuline, and 3-caffeoylshikimic acid emerged as the top three ligands in terms of binding affinity. Post-docking analysis revealed that interactions with Arg76, Asn224, Ser259, and Lys302 amino acid residues of the receptor protein were important for the optimum binding affinity of ligands. Molecular dynamics simulation was performed comprehensively to study the stability of the protein-ligand complexes. In-depth assessment of root-mean-square deviation (RMSD), root mean square fluctuation (RMSF), polar surface area (PSA), B-Factor, radius of gyration (Rg), solvent accessible surface area (SASA), and molecular surface area (MolSA) values of the protein-ligand complexes affirmed that the candidates with the best binding affinity formed the most stable protein-ligand complexes. To authenticate the potentialities of the ligands as target-specific drugs, an
Identifiants
pubmed: 34857680
doi: 10.7555/JBR.35.20210111
pmc: PMC8637655
doi:
Types de publication
Journal Article
Langues
eng
Pagination
459-473Références
Cureus. 2021 May 2;13(5):e14797
pubmed: 34094756
J Chem Inf Model. 2011 Dec 27;51(12):3078-92
pubmed: 22014038
J Struct Biol. 2012 Sep;179(3):269-78
pubmed: 21963794
Structure. 2011 Jun 8;19(6):859-67
pubmed: 21645856
Antiviral Res. 2020 Feb;174:104701
pubmed: 31877348
J Virol. 2006 Jun;80(11):5189-98
pubmed: 16698999
Vet Med Sci. 2020 Nov;6(4):992-999
pubmed: 32364675
Nucleic Acids Res. 2018 Jul 2;46(W1):W296-W303
pubmed: 29788355
J Chem Phys. 2020 Oct 7;153(13):134110
pubmed: 33032406
J Adv Vet Anim Res. 2021 Mar 05;8(1):24-35
pubmed: 33860009
Acta Crystallogr F Struct Biol Commun. 2014 Nov;70(Pt 11):1445-67
pubmed: 25372810
Future Med Chem. 2010 Jan;2(1):81-92
pubmed: 21426047
ACS Omega. 2020 Jun 25;5(26):16076-16084
pubmed: 32656429
Cell Microbiol. 2013 May;15(5):689-700
pubmed: 23279385
J Virol. 2018 Jul 31;92(16):
pubmed: 29899092
J Virol. 2011 Jul;85(14):7246-55
pubmed: 21561907
Methods Mol Biol. 2015;1263:243-50
pubmed: 25618350
PLoS Pathog. 2018 Dec 21;14(12):e1007439
pubmed: 30576397
Microorganisms. 2021 Apr 07;9(4):
pubmed: 33917071
Nucleic Acids Res. 2021 Jan 8;49(D1):D1388-D1395
pubmed: 33151290
Curr Opin Infect Dis. 2001 Dec;14(6):757-64
pubmed: 11964896
J Med Chem. 2012 Jul 26;55(14):6582-94
pubmed: 22716043
J Virol. 2021 Feb 3;:
pubmed: 33536168
Hum Vaccin Immunother. 2016 Aug 2;12(8):2113-2116
pubmed: 27058686
Nucleic Acids Res. 2018 Jul 2;46(W1):W438-W442
pubmed: 29846643
Antiviral Res. 2018 Dec;160:87-93
pubmed: 30339847
Protein Sci. 2007 Jan;16(1):125-34
pubmed: 17123959
Brief Bioinform. 2020 Dec 1;21(6):2206-2218
pubmed: 31799600
Front Immunol. 2019 Mar 13;10:372
pubmed: 30918506
J Med Chem. 2016 May 12;59(9):4035-61
pubmed: 26807648
J Med Chem. 2006 Dec 28;49(26):7559-83
pubmed: 17181137
Am J Trop Med Hyg. 2017 Apr;96(4):935-943
pubmed: 28167603
J Virol. 2016 Jun 24;90(14):6412-6429
pubmed: 27147735
J Virol. 2017 Jan 31;91(4):
pubmed: 27928003
Nucleic Acids Res. 2018 Jul 2;46(W1):W338-W343
pubmed: 29762700
J Comput Chem. 2015 May 15;36(13):996-1007
pubmed: 25824339
Curr Top Microbiol Immunol. 2020 May 27;:
pubmed: 32458151
ACS Chem Neurosci. 2010 Jun 16;1(6):435-49
pubmed: 22778837
J Virol. 2018 Feb 12;92(5):
pubmed: 29237830
PLoS One. 2015 Apr 13;10(4):e0124377
pubmed: 25874572
Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W255-9
pubmed: 18463137
Cell. 2015 Aug 13;162(4):738-50
pubmed: 26276630
Bioorg Med Chem. 2015 Dec 15;23(24):7661-70
pubmed: 26652968
FEBS Open Bio. 2017 Jul 17;7(8):1064-1077
pubmed: 28781947
Biochem Pharmacol. 2004 Feb 15;67(4):767-76
pubmed: 14757177
Sci Rep. 2016 May 03;6:25280
pubmed: 27140942