Genomic consequences of colonisation, migration and genetic drift in barn owl insular populations of the eastern Mediterranean.
Tyto alba
demographic inference
inbreeding
population genomics
whole genome sequencing
Journal
Molecular ecology
ISSN: 1365-294X
Titre abrégé: Mol Ecol
Pays: England
ID NLM: 9214478
Informations de publication
Date de publication:
03 2022
03 2022
Historique:
revised:
01
11
2021
received:
17
06
2021
accepted:
17
11
2021
pubmed:
12
12
2021
medline:
22
3
2022
entrez:
11
12
2021
Statut:
ppublish
Résumé
The study of insular populations was key in the development of evolutionary theory. The successful colonisation of an island depends on the geographic context, and specific characteristics of the organism and the island, but also on stochastic processes. As a result, apparently identical islands may harbour populations with contrasting histories. Here, we use whole genome sequences of 65 barn owls to investigate the patterns of inbreeding and genetic diversity of insular populations in the eastern Mediterranean Sea. We focus on Crete and Cyprus, islands with similar size, climate and distance to mainland, that provide natural replicates for a comparative analysis of the impacts of microevolutionary processes on isolated populations. We show that barn owl populations from each island have a separate origin, Crete being genetically more similar to other Greek islands and mainland Greece, and Cyprus more similar to the Levant. Further, our data show that their respective demographic histories following colonisation were also distinct. On the one hand, Crete harbours a small population and maintains very low levels of gene flow with neighbouring populations. This has resulted in low genetic diversity, strong genetic drift, increased relatedness in the population and remote inbreeding. Cyprus, on the other hand, appears to maintain enough gene flow with the mainland to avoid such an outcome. Our study provides a comparative population genomic analysis of the effects of neutral processes on a classical island-mainland model system. It provides empirical evidence for the role of stochastic processes in determining the fate of diverging isolated populations.
Identifiants
pubmed: 34894026
doi: 10.1111/mec.16324
pmc: PMC9305133
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
1375-1388Informations de copyright
© 2021 The Authors. Molecular Ecology published by John Wiley & Sons Ltd.
Références
Mol Phylogenet Evol. 2018 Aug;125:127-137
pubmed: 29535030
Am J Hum Genet. 2008 Sep;83(3):359-72
pubmed: 18760389
Bioinformatics. 2014 Aug 1;30(15):2114-20
pubmed: 24695404
Gigascience. 2015 Feb 25;4:7
pubmed: 25722852
Nature. 2016 Oct 13;538(7624):207-214
pubmed: 27654914
Genetics. 2017 Aug;206(4):2085-2103
pubmed: 28550018
Bioinformatics. 2010 Feb 1;26(3):419-20
pubmed: 20080509
Evolution. 2010 Jul;64(7):1944-54
pubmed: 20148951
Mol Biol Evol. 2022 Jan 7;39(1):
pubmed: 34893883
PLoS Genet. 2012;8(11):e1003100
pubmed: 23209444
Bioinformatics. 2018 Sep 15;34(18):3094-3100
pubmed: 29750242
Mol Ecol. 2014 Nov;23(22):5508-23
pubmed: 25294501
Oecologia. 2006 Aug;149(1):44-51
pubmed: 16645855
Mol Biol Evol. 2018 Jun 1;35(6):1547-1549
pubmed: 29722887
Proc Biol Sci. 2011 Apr 7;278(1708):1034-43
pubmed: 20880891
Bioinformatics. 2009 Jul 15;25(14):1754-60
pubmed: 19451168
Evolution. 2004 Sep;58(9):1891-900
pubmed: 15521449
Mol Biol Evol. 2013 Nov;30(11):2531-40
pubmed: 23955518
Mol Ecol. 2016 May;25(10):2144-64
pubmed: 26946320
Bioinformatics. 2012 Dec 15;28(24):3326-8
pubmed: 23060615
Mol Syst Biol. 2011 Oct 11;7:539
pubmed: 21988835
Mol Ecol. 2022 Jan;31(2):482-497
pubmed: 34695244
Ecol Lett. 2015 Feb;18(2):200-17
pubmed: 25560682
Mol Ecol. 2007 Aug;16(16):3438-52
pubmed: 17688544
Evolution. 2016 Jan;70(1):140-53
pubmed: 26773815
Elife. 2018 Aug 23;7:
pubmed: 30125248
Mol Ecol. 2022 Mar;31(5):1375-1388
pubmed: 34894026
Science. 2014 Dec 12;346(6215):1311-20
pubmed: 25504712
Nature. 2009 Feb 12;457(7231):830-6
pubmed: 19212401
Nat Genet. 2016 Jan;48(1):94-100
pubmed: 26642242
Nat Protoc. 2012 Feb 16;7(3):467-78
pubmed: 22343429
Mol Ecol Resour. 2010 May;10(3):564-7
pubmed: 21565059
Genetics. 2012 Nov;192(3):1065-93
pubmed: 22960212
G3 (Bethesda). 2015 Sep 18;5(11):2463-73
pubmed: 26384769
Heredity (Edinb). 1997 Mar;78 ( Pt 3):311-27
pubmed: 9119706
Ecol Evol. 2020 Feb 19;10(5):2284-2298
pubmed: 32184981
Nat Rev Genet. 2018 Apr;19(4):220-234
pubmed: 29335644
Philos Trans R Soc Lond B Biol Sci. 1996 Jun 29;351(1341):785-94; discussion 795
pubmed: 8693020
Bioinformatics. 2011 Aug 1;27(15):2156-8
pubmed: 21653522
Genetics. 2014 Apr;196(4):973-83
pubmed: 24496008
PLoS Genet. 2012;8(11):e1002967
pubmed: 23166502
BMC Bioinformatics. 2014 Nov 25;15:356
pubmed: 25420514
Genome Res. 2016 Sep;26(9):1211-8
pubmed: 27412854
Curr Protoc Bioinformatics. 2013;43:11.10.1-11.10.33
pubmed: 25431634
Curr Biol. 2015 May 18;25(10):1375-80
pubmed: 25891404
PLoS Genet. 2013 Oct;9(10):e1003905
pubmed: 24204310
Nature. 2011 Jul 13;475(7357):493-6
pubmed: 21753753
Trends Ecol Evol. 2014 Jan;29(1):51-63
pubmed: 24139972