Surveying over 100 predictors of intrinsic disorder in proteins.

CAID CASP Intrinsically disordered proteins deep learning intrinsic disorder intrinsically disordered regions machine learning prediction predictive performance protein function

Journal

Expert review of proteomics
ISSN: 1744-8387
Titre abrégé: Expert Rev Proteomics
Pays: England
ID NLM: 101223548

Informations de publication

Date de publication:
12 2021
Historique:
pubmed: 14 12 2021
medline: 3 2 2022
entrez: 13 12 2021
Statut: ppublish

Résumé

Intrinsic disorder prediction field develops, assesses, and deploys computational predictors of disorder in protein sequences and constructs and disseminates databases of these predictions. Over 40 years of research resulted in the release of numerous resources. We identify and briefly summarize the most comprehensive to date collection of over 100 disorder predictors. We focus on their predictive models, availability and predictive performance. We categorize and study them from a historical point of view to highlight informative trends. We find a consistent trend of improvements in predictive quality as newer and more advanced predictors are developed. The original focus on machine learning methods has shifted to meta-predictors in early 2010s, followed by a recent transition to deep learning. The use of deep learners will continue in foreseeable future given recent and convincing success of these methods. Moreover, a broad range of resources that facilitate convenient collection of accurate disorder predictions is available to users. They include web servers and standalone programs for disorder prediction, servers that combine prediction of disorder and disorder functions, and large databases of pre-computed predictions. We also point to the need to address the shortage of accurate methods that predict disordered binding regions.

Identifiants

pubmed: 34894985
doi: 10.1080/14789450.2021.2018304
doi:

Substances chimiques

Intrinsically Disordered Proteins 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

1019-1029

Auteurs

Bi Zhao (B)

Department of Computer Science, Virginia Commonwealth University, Richmond, Virginia, USA.

Lukasz Kurgan (L)

Department of Computer Science, Virginia Commonwealth University, Richmond, Virginia, USA.

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