Using dynamic time warping self-organizing maps to characterize diurnal patterns in environmental exposures.


Journal

Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288

Informations de publication

Date de publication:
15 12 2021
Historique:
received: 14 10 2020
accepted: 25 11 2021
entrez: 16 12 2021
pubmed: 17 12 2021
medline: 27 1 2022
Statut: epublish

Résumé

Advances in measurement technology are producing increasingly time-resolved environmental exposure data. We aim to gain new insights into exposures and their potential health impacts by moving beyond simple summary statistics (e.g., means, maxima) to characterize more detailed features of high-frequency time series data. This study proposes a novel variant of the Self-Organizing Map (SOM) algorithm called Dynamic Time Warping Self-Organizing Map (DTW-SOM) for unsupervised pattern discovery in time series. This algorithm uses DTW, a similarity measure that optimally aligns interior patterns of sequential data, both as the similarity measure and training guide of the neural network. We applied DTW-SOM to a panel study monitoring indoor and outdoor residential temperature and particulate matter air pollution (PM

Identifiants

pubmed: 34912034
doi: 10.1038/s41598-021-03515-1
pii: 10.1038/s41598-021-03515-1
pmc: PMC8674322
doi:

Substances chimiques

Air Pollutants 0
Particulate Matter 0

Types de publication

Journal Article Research Support, N.I.H., Extramural

Langues

eng

Sous-ensembles de citation

IM

Pagination

24052

Subventions

Organisme : NIBIB NIH HHS
ID : U24 EB021996
Pays : United States
Organisme : NIBIB NIH HHS
ID : U54 EB021973
Pays : United States
Organisme : NIBIB NIH HHS
ID : U54 EB022002
Pays : United States
Organisme : NIEHS NIH HHS
ID : P30 ES007048
Pays : United States

Informations de copyright

© 2021. The Author(s).

Références

Environ Health. 2014 Jul 03;13:56
pubmed: 24990361
J Occup Environ Hyg. 2018 Jul;15(7):559-567
pubmed: 29683781
Environ Health Perspect. 2003 Nov;111(14):1773-8
pubmed: 14594630
Environ Health Perspect. 2008 Apr;116(4):486-91
pubmed: 18414631
Environ Health Perspect. 2002 Oct;110(10):A607-17
pubmed: 12361942

Auteurs

Kenan Li (K)

Spatial Sciences Institute, University of Southern California, Los Angeles, USA. kenanl@usc.edu.

Katherine Sward (K)

Department of Biomedical Informatics, University of Utah, Salt Lake City, USA.

Huiyu Deng (H)

City of Hope National Medical Center, Duarte, USA.

John Morrison (J)

Department of Population and Public Health Sciences, University of Southern California, Los Angeles, USA.

Rima Habre (R)

Department of Population and Public Health Sciences, University of Southern California, Los Angeles, USA.

Meredith Franklin (M)

Department of Population and Public Health Sciences, University of Southern California, Los Angeles, USA.

Yao-Yi Chiang (YY)

Department of Computer Science and Engineering, University of Minnesota, Minneapolis, USA.

Jose Luis Ambite (JL)

Department of Computer Science, University of Southern California, Los Angeles, USA.

John P Wilson (JP)

Spatial Sciences Institute, University of Southern California, Los Angeles, USA.
Department of Population and Public Health Sciences, University of Southern California, Los Angeles, USA.
Department of Computer Science, University of Southern California, Los Angeles, USA.
Department of Civil and Environmental Engineering, University of Southern California, Los Angeles, USA.
School of Architecture, University of Southern California, Los Angeles, USA.
Department of Sociology, University of Southern California, Los Angeles, USA.

Sandrah P Eckel (SP)

Spatial Sciences Institute, University of Southern California, Los Angeles, USA.

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Classifications MeSH