Computed tomography radiomics for the prediction of thymic epithelial tumor histology, TNM stage and myasthenia gravis.


Journal

PloS one
ISSN: 1932-6203
Titre abrégé: PLoS One
Pays: United States
ID NLM: 101285081

Informations de publication

Date de publication:
2021
Historique:
received: 12 06 2021
accepted: 01 12 2021
entrez: 20 12 2021
pubmed: 21 12 2021
medline: 11 1 2022
Statut: epublish

Résumé

To evaluate CT-derived radiomics for machine learning-based classification of thymic epithelial tumor (TET) stage (TNM classification), histology (WHO classification) and the presence of myasthenia gravis (MG). Patients with histologically confirmed TET in the years 2000-2018 were retrospectively included, excluding patients with incompatible imaging or other tumors. CT scans were reformatted uniformly, gray values were normalized and discretized. Tumors were segmented manually; 15 scans were re-segmented after 2 weeks by two readers. 1316 radiomic features were calculated (pyRadiomics). Features with low intra-/inter-reader agreement (ICC<0.75) were excluded. Repeated nested cross-validation was used for feature selection (Boruta algorithm), model training, and evaluation (out-of-fold predictions). Shapley additive explanation (SHAP) values were calculated to assess feature importance. 105 patients undergoing surgery for TET were identified. After applying exclusion criteria, 62 patients (28 female; mean age, 57±14 years; range, 22-82 years) with 34 low-risk TET (LRT; WHO types A/AB/B1), 28 high-risk TET (HRT; WHO B2/B3/C) in early stage (49, TNM stage I-II) or advanced stage (13, TNM III-IV) were included. 14(23%) of the patients had MG. 334(25%) features were excluded after intra-/inter-reader analysis. Discriminatory performance of the random forest classifiers was good for histology(AUC, 87.6%; 95% confidence interval, 76.3-94.3) and TNM stage(AUC, 83.8%; 95%CI, 66.9-93.4) but poor for the prediction of MG (AUC, 63.9%; 95%CI, 44.8-79.5). CT-derived radiomic features may be a useful imaging biomarker for TET histology and TNM stage.

Identifiants

pubmed: 34928978
doi: 10.1371/journal.pone.0261401
pii: PONE-D-21-19370
pmc: PMC8687592
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

e0261401

Déclaration de conflit d'intérêts

The authors have declared that no competing interests exist.

Références

Eur J Radiol. 2017 Jul;92:84-92
pubmed: 28624025
Insights Imaging. 2020 Aug 12;11(1):91
pubmed: 32785796
Nat Mach Intell. 2020 Jan;2(1):56-67
pubmed: 32607472
Eur Radiol. 2021 Jan;31(1):423-435
pubmed: 32757051
Invest Radiol. 2020 Sep;55(9):601-616
pubmed: 32209816
Invest Radiol. 2018 Jun;53(6):338-343
pubmed: 29420321
AJR Am J Roentgenol. 2004 Aug;183(2):283-9
pubmed: 15269013
Radiology. 2019 Apr;291(1):53-59
pubmed: 30694160
Cancer Imaging. 2020 Dec 11;20(1):86
pubmed: 33308325
Eur Radiol. 2021 Jul;31(7):4595-4605
pubmed: 33443602
Eur J Radiol. 2018 May;102:61-67
pubmed: 29685546
Oncol Rep. 2020 Apr;43(4):1256-1266
pubmed: 32323834
AJR Am J Roentgenol. 2020 Feb;214(2):341-347
pubmed: 31691609
Ann Thorac Surg. 2021 Apr 9;:
pubmed: 33844992
Eur J Cardiothorac Surg. 2016 Jun;49(6):1545-52
pubmed: 26670806
Br J Radiol. 2018 Feb;91(1083):20170546
pubmed: 29182373
PLoS One. 2015 May 04;10(5):e0126175
pubmed: 25938505
Radiology. 2020 May;295(2):328-338
pubmed: 32154773
Radiology. 2016 Apr;279(1):5-10
pubmed: 26989927
Nat Methods. 2020 Mar;17(3):261-272
pubmed: 32015543
AJR Am J Roentgenol. 2020 Feb;214(2):328-340
pubmed: 31799873
J Cardiothorac Vasc Anesth. 2019 Sep;33(9):2537-2545
pubmed: 30219643
Lung Cancer. 2018 Apr;118:161-170
pubmed: 29571996
Biomed Res Int. 2019 May 28;2019:3616852
pubmed: 31275968
J Comput Assist Tomogr. 2001 May-Jun;25(3):388-93
pubmed: 11351188
Cancer Res. 2017 Nov 1;77(21):e104-e107
pubmed: 29092951
Eur J Radiol. 2020 May;126:108929
pubmed: 32169748
Comput Med Imaging Graph. 2020 Apr;81:101716
pubmed: 32222685
J Thorac Oncol. 2014 May;9(5):596-611
pubmed: 24722150
Ann Oncol. 2015 Sep;26 Suppl 5:v40-55
pubmed: 26314779
J Cheminform. 2014 Mar 29;6(1):10
pubmed: 24678909
Pathol Int. 1994 May;44(5):359-67
pubmed: 8044305
Thorac Surg Clin. 2011 Feb;21(1):1-12, v
pubmed: 21070982
Radiol Med. 2018 May;123(5):345-350
pubmed: 29307077
J Thorac Dis. 2020 Dec;12(12):7607-7612
pubmed: 33447451
Radiographics. 2017 May-Jun;37(3):758-776
pubmed: 28493800
Invest Radiol. 2015 Nov;50(11):757-65
pubmed: 26115366
J Clin Invest. 2006 Nov;116(11):2843-54
pubmed: 17080188
Front Oncol. 2021 May 05;11:631964
pubmed: 34026611

Auteurs

Christian Blüthgen (C)

Institute of Diagnostic and Interventional Radiology, University Hospital of Zurich, Zurich, Switzerland.

Miriam Patella (M)

Department of Thoracic Surgery, University Hospital of Zurich, Zurich, Switzerland.

André Euler (A)

Institute of Diagnostic and Interventional Radiology, University Hospital of Zurich, Zurich, Switzerland.

Bettina Baessler (B)

Institute of Diagnostic and Interventional Radiology, University Hospital of Zurich, Zurich, Switzerland.

Katharina Martini (K)

Institute of Diagnostic and Interventional Radiology, University Hospital of Zurich, Zurich, Switzerland.

Jochen von Spiczak (J)

Institute of Diagnostic and Interventional Radiology, University Hospital of Zurich, Zurich, Switzerland.

Didier Schneiter (D)

Department of Thoracic Surgery, University Hospital of Zurich, Zurich, Switzerland.

Isabelle Opitz (I)

Department of Thoracic Surgery, University Hospital of Zurich, Zurich, Switzerland.

Thomas Frauenfelder (T)

Institute of Diagnostic and Interventional Radiology, University Hospital of Zurich, Zurich, Switzerland.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH