Genetic Factors Underlying Single Fiber Quality in A-Genome Donor Asian Cotton (
AFIS
Asian cotton
GWAS
SNPs
fiber quality
multi-environment
Journal
Frontiers in genetics
ISSN: 1664-8021
Titre abrégé: Front Genet
Pays: Switzerland
ID NLM: 101560621
Informations de publication
Date de publication:
2021
2021
Historique:
received:
14
08
2021
accepted:
17
11
2021
entrez:
24
12
2021
pubmed:
25
12
2021
medline:
25
12
2021
Statut:
epublish
Résumé
The study of A-genome Asian cotton as a potential fiber donor in Gossypium species may offer an enhanced understanding of complex genetics and novel players related to fiber quality traits. Assessment of individual fibers providing classified fiber quality information to the textile industry is Advanced Fiber Information System (AFIS) in the recent technological era. Keeping the scenario, a diverse collection of 215 Asiatic cotton accessions were evaluated across three agro-ecological zones of China. Genome-Wide Association Studies (GWAS) was performed to detect association signals related to 17 AFIS fiber quality traits grouped into four categories viz: NEPs, fiber length, maturity, and fineness. Significant correlations were found within as well as among different categories of various traits related to fiber quality. Fiber fineness has shown a strong correlation to all other categories, whereas these categories are shown interrelationships
Identifiants
pubmed: 34950189
doi: 10.3389/fgene.2021.758665
pii: 758665
pmc: PMC8689003
doi:
Types de publication
Journal Article
Langues
eng
Pagination
758665Informations de copyright
Copyright © 2021 Iqbal, Tang, Sarfraz, Iqbal, Li, He, Jia, Sun, Pan, Xiaoli, Mahmood, Ahmad, Nazir, Chen, Wang, Pang, Wei and Du.
Déclaration de conflit d'intérêts
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Références
JAMA. 2008 Mar 19;299(11):1335-44
pubmed: 18349094
Nat Genet. 2014 Jun;46(6):567-72
pubmed: 24836287
Nat Genet. 2002 Feb;30(2):190-3
pubmed: 11780140
Genetics. 2007 Dec;177(4):2223-32
pubmed: 17947413
Nat Genet. 2010 Apr;42(4):348-54
pubmed: 20208533
Mol Plant. 2009 Sep;2(5):1000-14
pubmed: 19825675
PLoS Genet. 2006 Dec;2(12):e190
pubmed: 17194218
PLoS One. 2014 Nov 05;9(11):e111861
pubmed: 25372141
J Exp Bot. 2006;57(12):3019-31
pubmed: 16873448
Plant Physiol. 2013 Jun;162(2):589-603
pubmed: 23596191
Genetics. 2007 Apr;175(4):1937-44
pubmed: 17287533
Brief Bioinform. 2021 Jul 20;22(4):
pubmed: 33126247
Plant Cell. 2009 Aug;21(8):2237-52
pubmed: 19671879
Plant Cell. 2010 Sep;22(9):3034-52
pubmed: 20817848
Annu Rev Plant Biol. 2003;54:357-74
pubmed: 14502995
Plant Cell. 2010 Oct;22(10):3489-503
pubmed: 21037103
J Chem Ecol. 1992 Feb;18(2):105-14
pubmed: 24254902
Theor Appl Genet. 2014 Feb;127(2):283-95
pubmed: 24170350
BMC Genet. 2005 Dec 30;6 Suppl 1:S134
pubmed: 16451593
Plant J. 2003 Jul;35(2):206-18
pubmed: 12848826
Nucleic Acids Res. 2010 Sep;38(16):e164
pubmed: 20601685
Genetics. 2004 Aug;167(4):1975-86
pubmed: 15342534
Bioinformatics. 2019 May 15;35(10):1786-1788
pubmed: 30321304
Theor Appl Genet. 2002 Feb;104(2-3):482-489
pubmed: 12582722
Biotechnol Prog. 2010 Jan-Feb;26(1):21-5
pubmed: 19847887
Planta. 2001 Oct;213(6):898-906
pubmed: 11722126
BMC Genomics. 2018 Oct 29;19(1):776
pubmed: 30373509
PLoS Pathog. 2011 Dec;7(12):e1002409
pubmed: 22174675
J Biol Chem. 2006 Sep 15;281(37):27145-57
pubmed: 16831869
Genetica. 2009 Jul;136(3):401-17
pubmed: 19067183
Nature. 2012 Dec 20;492(7429):423-7
pubmed: 23257886
PLoS One. 2014 Jan 23;9(1):e86308
pubmed: 24466016
Plant Physiol. 2004 Dec;136(4):4010-22
pubmed: 15591448
Am J Hum Genet. 2007 Sep;81(3):559-75
pubmed: 17701901
Nat Genet. 2018 Jun;50(6):796-802
pubmed: 29736014
FEBS J. 2013 Jul;280(14):3328-39
pubmed: 23651081
Theor Appl Genet. 2006 Oct;113(6):1121-30
pubmed: 16896707
Plant J. 2005 Dec;44(6):1054-64
pubmed: 16359397
Genetics. 2003 Aug;164(4):1567-87
pubmed: 12930761
Nat Genet. 2006 Feb;38(2):203-8
pubmed: 16380716
Brief Bioinform. 2011 Sep;12(5):449-62
pubmed: 21873635