Influenza A and D Viruses in Non-Human Mammalian Hosts in Africa: A Systematic Review and Meta-Analysis.
Africa
animal influenza
influenza A virus
influenza D virus
prevalence
seroprevalence
Journal
Viruses
ISSN: 1999-4915
Titre abrégé: Viruses
Pays: Switzerland
ID NLM: 101509722
Informations de publication
Date de publication:
02 12 2021
02 12 2021
Historique:
received:
03
11
2021
revised:
25
11
2021
accepted:
30
11
2021
entrez:
28
12
2021
pubmed:
29
12
2021
medline:
15
2
2022
Statut:
epublish
Résumé
We conducted a systematic review and meta-analysis to investigate the prevalence and current knowledge of influenza A virus (IAV) and influenza D virus (IDV) in non-human mammalian hosts in Africa. PubMed, Google Scholar, Wiley Online Library and World Organisation for Animal Health (OIE-WAHIS) were searched for studies on IAV and IDV from 2000 to 2020. Pooled prevalence and seroprevalences were estimated using the quality effects meta-analysis model. The estimated pooled prevalence and seroprevalence of IAV in pigs in Africa was 1.6% (95% CI: 0-5%) and 14.9% (95% CI: 5-28%), respectively. The seroprevalence of IDV was 87.2% (95% CI: 24-100%) in camels, 9.3% (95% CI: 0-24%) in cattle, 2.2% (95% CI: 0-4%) in small ruminants and 0.0% (95% CI: 0-2%) in pigs. In pigs, H1N1 and H1N1pdm09 IAVs were commonly detected. Notably, the highly pathogenic H5N1 virus was also detected in pigs. Other subtypes detected serologically and/or virologically included H3N8 and H7N7 in equids, H1N1, and H3N8 and H5N1 in dogs and cats. Furthermore, various wildlife animals were exposed to different IAV subtypes. For prudent mitigation of influenza epizootics and possible human infections, influenza surveillance efforts in Africa should not neglect non-human mammalian hosts. The impact of IAV and IDV in non-human mammalian hosts in Africa deserves further investigation.
Identifiants
pubmed: 34960680
pii: v13122411
doi: 10.3390/v13122411
pmc: PMC8706448
pii:
doi:
Substances chimiques
Antibodies, Viral
0
Types de publication
Journal Article
Meta-Analysis
Research Support, Non-U.S. Gov't
Systematic Review
Langues
eng
Sous-ensembles de citation
IM
Références
Vet Microbiol. 2015 Mar 23;176(1-2):165-71
pubmed: 25631252
Vet Microbiol. 2015 May 15;177(1-2):201-5
pubmed: 25778544
Parasit Vectors. 2018 Feb 20;11(1):100
pubmed: 29458421
Trop Biomed. 2019 Dec 1;36(4):1054-1060
pubmed: 33597474
Am J Pathol. 2006 Jan;168(1):176-83; quiz 364
pubmed: 16400021
Vet Microbiol. 2020 Feb;241:108572
pubmed: 31928706
mBio. 2014 Mar 04;5(2):e00031-14
pubmed: 24595369
Emerg Infect Dis. 2017 Aug;23(8):1392-1396
pubmed: 28726609
Epidemiol Infect. 2017 Dec;145(16):3345-3360
pubmed: 29166978
Elife. 2016 Apr 15;5:e12217
pubmed: 27113719
Emerg Infect Dis. 2012 Feb;18(2):315-7
pubmed: 22305505
PLoS Pathog. 2013 Feb;9(2):e1003176
pubmed: 23408893
Acta Trop. 2018 Nov;187:214-221
pubmed: 29949731
Sci Rep. 2018 Apr 12;8(1):5900
pubmed: 29651056
BMC Res Notes. 2019 Sep 24;12(1):628
pubmed: 31551085
Influenza Other Respir Viruses. 2013 May;7(3):271-9
pubmed: 22642704
Equine Vet J. 2018 Nov;50(6):793-799
pubmed: 29574904
Vet Microbiol. 2020 Sep;248:108820
pubmed: 32891950
Emerg Infect Dis. 2016 Aug;22(8):1517-9
pubmed: 27434213
Transbound Emerg Dis. 2017 Oct;64(5):1557-1568
pubmed: 27484711
J Virol. 2005 Mar;79(5):2814-22
pubmed: 15709000
Zoonoses Public Health. 2010 Dec;57(7-8):e89-94
pubmed: 19912605
Emerg Infect Dis. 2012 Oct;18(10):1665-8
pubmed: 23017204
Vet Microbiol. 2012 Apr 23;156(1-2):189-92
pubmed: 21963416
Viruses. 2019 Jun 05;11(6):
pubmed: 31195597
PLoS Med. 2009 Jul 21;6(7):e1000097
pubmed: 19621072
Viruses. 2020 Sep 07;12(9):
pubmed: 32906666
Zoonoses Public Health. 2008 Sep;55(7):342-51
pubmed: 18667027
Ann N Y Acad Sci. 2002 Oct;969:217-23
pubmed: 12381595
J Vet Med Sci. 2017 May 3;79(5):848-851
pubmed: 28321029
PLoS One. 2016 Sep 28;11(9):e0163828
pubmed: 27682422
Zoonoses Public Health. 2016 Mar;63(2):106-11
pubmed: 26094828
Arch Virol. 1985;86(3-4):347-51
pubmed: 4062564
Viruses. 2021 Mar 25;13(4):
pubmed: 33805956
Viruses. 2019 Nov 30;11(12):
pubmed: 31801277
Nature. 2013 Nov 28;503(7477):535-8
pubmed: 24172901
J Infect Dis. 2020 Jan 2;221(2):175-182
pubmed: 30838397
Nat Rev Dis Primers. 2018 Jun 28;4(1):3
pubmed: 29955068
Emerg Infect Dis. 2004 Dec;10(12):2189-91
pubmed: 15663858
Viruses. 2020 Nov 26;12(12):
pubmed: 33256041
Euro Surveill. 2014 May 08;19(18):
pubmed: 24832117
J Gen Virol. 1991 Jan;72 ( Pt 1):103-9
pubmed: 1990058
J Virol. 2019 Jan 4;93(2):
pubmed: 30381492
Acta Virol. 1958 Jan-Mar;2(1):52-61
pubmed: 13533033
Pan Afr Med J. 2013 Nov 17;16:102
pubmed: 24711881
Emerg Infect Dis. 2019 Jun;25(6):1224-1226
pubmed: 31107233
Arch Virol. 2002 Jun;147(6):1209-20
pubmed: 12111430
Zoonoses Public Health. 2020 Sep;67(6):697-707
pubmed: 32710707
PLoS One. 2015 May 12;10(5):e0127035
pubmed: 25965069
Sci Rep. 2016 May 10;6:25845
pubmed: 27162026
Virology. 2006 Jan 20;344(2):480-91
pubmed: 16194557
PLoS One. 2009;4(3):e4682
pubmed: 19270752
Emerg Infect Dis. 2012 Sep;18(9):1446-52
pubmed: 22932129
Emerg Infect Dis. 2016 Feb;22(2):352-4
pubmed: 26812282
Virus Res. 2008 Dec;138(1-2):43-9
pubmed: 18789984
Pak J Biol Sci. 2013 Jun 1;16(11):524-9
pubmed: 24498821
J Virol. 2015 May;89(10):5340-9
pubmed: 25740998
Cell Host Microbe. 2010 Jun 25;7(6):440-51
pubmed: 20542248
Emerg Infect Dis. 2005 May;11(5):699-701
pubmed: 15890122
Prev Vet Med. 2007 May 16;79(2-4):294-303
pubmed: 17223213
Emerg Infect Dis. 2017 Sep;23(9):1556-1559
pubmed: 28820371
Transbound Emerg Dis. 2019 Sep;66(5):2184-2187
pubmed: 31228318
PLoS One. 2018 Feb 9;13(2):e0192721
pubmed: 29425232
Infect Genet Evol. 2010 Dec;10(8):1286-8
pubmed: 20732458
PLoS Pathog. 2013;9(10):e1003657
pubmed: 24130481
Virus Res. 2015 Jul 2;205:1-6
pubmed: 25997928
Mol Cell Proteomics. 2019 Dec;18(12):2348-2358
pubmed: 31604803
Transbound Emerg Dis. 2021 May;68(3):1392-1399
pubmed: 32815301
Transbound Emerg Dis. 2021 May;68(3):1253-1262
pubmed: 32770642
J Virol. 1988 Sep;62(9):3348-55
pubmed: 3404579
J Equine Sci. 2016;27(3):99-105
pubmed: 27703404
Vet J. 2011 Feb;187(2):200-6
pubmed: 19945318
Emerg Infect Dis. 2018 Jun;24(6):1020-1028
pubmed: 29774857
J Microbiol Immunol Infect. 2008 Jun;41(3):231-42
pubmed: 18629419
Science. 2005 Oct 21;310(5747):482-5
pubmed: 16186182
J Virol. 2015 Mar;89(6):2990-4
pubmed: 25540375
Influenza Other Respir Viruses. 2008 May;2(3):99-105
pubmed: 19453469
Vet Rec. 2007 Jul 21;161(3):104-5
pubmed: 17652438
Afr J Med Med Sci. 2014 Dec;43 Suppl:111-5
pubmed: 26949788
Emerg Infect Dis. 2015 Feb;21(2):368-71
pubmed: 25628038
J Biomed Sci. 2010 Apr 14;17:25
pubmed: 20398268
BMC Vet Res. 2014 Feb 27;10:50
pubmed: 24576325
Rev Sci Tech. 2004 Dec;23(3):921-30
pubmed: 15861887
Influenza Other Respir Viruses. 2017 Mar;11(2):182-192
pubmed: 27860313
Vet Microbiol. 2014 Jan 10;168(1):197-201
pubmed: 24321146
Influenza Other Respir Viruses. 2013 Nov;7(6):1292-6
pubmed: 24034782
Microbiol Rev. 1992 Mar;56(1):152-79
pubmed: 1579108
Vet J. 2006 Sep;172(2):377-81
pubmed: 15914047
Environ Health Prev Med. 2019 Aug 17;24(1):53
pubmed: 31421676
PLoS One. 2012;7(6):e39206
pubmed: 22720076
J Gen Virol. 2014 Jun;95(Pt 6):1193-1210
pubmed: 24584475
Viruses. 2020 May 11;12(5):
pubmed: 32403268
Emerg Infect Dis. 2010 Apr;16(4):726-7
pubmed: 20350404
Viruses. 2020 Jan 21;12(2):
pubmed: 31973026
Arch Virol. 2018 Feb;163(2):359-364
pubmed: 29075888
PLoS Curr. 2011 Feb 11;3:RRN1209
pubmed: 21637347
J Epidemiol Community Health. 2013 Nov 1;67(11):974-8
pubmed: 23963506
Vet Microbiol. 2015 Nov 18;180(3-4):281-285
pubmed: 26414999
Virology. 2017 Jan 15;501:88-91
pubmed: 27888742
Can Vet J. 2010 Oct;51(10):1095-102
pubmed: 21197200
Vet Rec. 2014 Jan 25;174(4):96
pubmed: 24336761
Virology. 2015 Dec;486:28-34
pubmed: 26386554
Vet Ital. 2009 Jul-Sep;45(3):383-90
pubmed: 20391401
BMC Vet Res. 2014 Mar 04;10:55
pubmed: 24593895
Appl Environ Microbiol. 2010 Feb;76(3):724-32
pubmed: 19966020
Proc Natl Acad Sci U S A. 2012 Mar 13;109(11):4269-74
pubmed: 22371588
J Virol. 2015 Jan 15;89(2):1036-42
pubmed: 25355894
J Am Vet Med Assoc. 1963 Sep 15;143:587-90
pubmed: 14077956
BMJ. 2003 Sep 6;327(7414):557-60
pubmed: 12958120