Machine Learning-based Voice Assessment for the Detection of Positive and Recovered COVID-19 Patients.

Accuracy Cough SARS-CoV-2 Screening test Sensitivity Surveillance

Journal

Journal of voice : official journal of the Voice Foundation
ISSN: 1873-4588
Titre abrégé: J Voice
Pays: United States
ID NLM: 8712262

Informations de publication

Date de publication:
26 Nov 2021
Historique:
received: 28 09 2021
revised: 17 11 2021
accepted: 18 11 2021
entrez: 30 12 2021
pubmed: 31 12 2021
medline: 31 12 2021
Statut: aheadofprint

Résumé

Many virological tests have been implemented during the Coronavirus Disease 2019 (COVID-19) pandemic for diagnostic purposes, but they appear unsuitable for screening purposes. Furthermore, current screening strategies are not accurate enough to effectively curb the spread of the disease. Therefore, the present study was conducted within a controlled clinical environment to determine eventual detectable variations in the voice of COVID-19 patients, recovered and healthy subjects, and also to determine whether machine learning-based voice assessment (MLVA) can accurately discriminate between them, thus potentially serving as a more effective mass-screening tool. Three different subpopulations were consecutively recruited: positive COVID-19 patients, recovered COVID-19 patients and healthy individuals as controls. Positive patients were recruited within 10 days from nasal swab positivity. Recovery from COVID-19 was established clinically, virologically and radiologically. Healthy individuals reported no COVID-19 symptoms and yielded negative results at serological testing. All study participants provided three trials for multiple vocal tasks (sustained vowel phonation, speech, cough). All recordings were initially divided into three different binary classifications with a feature selection, ranking and cross-validated RBF-SVM pipeline. This brough a mean accuracy of 90.24%, a mean sensitivity of 91.15%, a mean specificity of 89.13% and a mean AUC of 0.94 across all tasks and all comparisons, and outlined the sustained vowel as the most effective vocal task for COVID discrimination. Moreover, a three-way classification was carried out on an external test set comprised of 30 subjects, 10 per class, with a mean accuracy of 80% and an accuracy of 100% for the detection of positive subjects. Within this assessment, recovered individuals proved to be the most difficult class to identify, and all the misclassified subjects were declared positive; this might be related to mid and short-term vocal traces of COVID-19, even after the clinical resolution of the infection. In conclusion, MLVA may accurately discriminate between positive COVID-19 patients, recovered COVID-19 patients and healthy individuals. Further studies should test MLVA among larger populations and asymptomatic positive COVID-19 patients to validate this novel screening technology and test its potential application as a potentially more effective surveillance strategy for COVID-19.

Identifiants

pubmed: 34965907
pii: S0892-1997(21)00388-X
doi: 10.1016/j.jvoice.2021.11.004
pmc: PMC8616736
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Informations de copyright

Copyright © 2021 The Voice Foundation. Published by Elsevier Inc. All rights reserved.

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Auteurs

Carlo Robotti (C)

Department of Otolaryngology - Head and Neck Surgery, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy; Department of Clinical, Surgical, Diagnostic and Pediatric Sciences, University of Pavia, Pavia, Italy. Electronic address: carlorobotti@gmail.com.

Giovanni Costantini (G)

Department of Electronic Engineering, University of Rome Tor Vergata, Rome, Italy. Electronic address: costantini@uniroma2.it.

Giovanni Saggio (G)

Department of Electronic Engineering, University of Rome Tor Vergata, Rome, Italy. Electronic address: saggio@uniroma2.it.

Valerio Cesarini (V)

Department of Electronic Engineering, University of Rome Tor Vergata, Rome, Italy.

Anna Calastri (A)

Department of Otolaryngology - Head and Neck Surgery, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy.

Eugenia Maiorano (E)

Department of Otolaryngology - Head and Neck Surgery, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy.

Davide Piloni (D)

Pneumology Unit, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy.

Tiziano Perrone (T)

Department of Internal Medicine, Fondazione IRCCS Policlinico San Matteo, University of Pavia, Pavia, Italy.

Umberto Sabatini (U)

Department of Internal Medicine, Fondazione IRCCS Policlinico San Matteo, University of Pavia, Pavia, Italy.

Virginia Valeria Ferretti (VV)

Clinical Epidemiology and Biometry Unit, Fondazione IRCCS Policlinico San Matteo Foundation, Pavia, Italy.

Irene Cassaniti (I)

Molecular Virology Unit, Microbiology and Virology Department, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy.

Fausto Baldanti (F)

Department of Clinical, Surgical, Diagnostic and Pediatric Sciences, University of Pavia, Pavia, Italy; Molecular Virology Unit, Microbiology and Virology Department, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy.

Andrea Gravina (A)

Otorhinolaryngology Department, University of Rome Tor Vergata, Rome, Italy.

Ahmed Sakib (A)

Otorhinolaryngology Department, University of Rome Tor Vergata, Rome, Italy.

Elena Alessi (E)

Internal Medicine Unit, Ospedale dei Castelli ASL Roma 6, Ariccia, Italy.

Matteo Pascucci (M)

Internal Medicine Unit, Ospedale dei Castelli ASL Roma 6, Ariccia, Italy.

Daniele Casali (D)

Department of Electronic Engineering, University of Rome Tor Vergata, Rome, Italy.

Zakarya Zarezadeh (Z)

Department of Electronic Engineering, University of Rome Tor Vergata, Rome, Italy.

Vincenzo Del Zoppo (VD)

Department of Electronic Engineering, University of Rome Tor Vergata, Rome, Italy.

Antonio Pisani (A)

Department of Brain and Behavioral Sciences, University of Pavia, Pavia, Italy; IRCCS Mondino Foundation, Pavia, Italy.

Marco Benazzo (M)

Department of Otolaryngology - Head and Neck Surgery, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy; Department of Clinical, Surgical, Diagnostic and Pediatric Sciences, University of Pavia, Pavia, Italy.

Classifications MeSH