Comparative Analysis of anti-Shine- Dalgarno Function in
RF2 (prfB)
bacteroidetes
initiation
ribosome
translation
Journal
Frontiers in molecular biosciences
ISSN: 2296-889X
Titre abrégé: Front Mol Biosci
Pays: Switzerland
ID NLM: 101653173
Informations de publication
Date de publication:
2021
2021
Historique:
received:
30
09
2021
accepted:
08
11
2021
entrez:
30
12
2021
pubmed:
31
12
2021
medline:
31
12
2021
Statut:
epublish
Résumé
The anti-Shine-Dalgarno (ASD) sequence of 16S rRNA is highly conserved across Bacteria, and yet usage of Shine-Dalgarno (SD) sequences in mRNA varies dramatically, depending on the lineage. Here, we compared the effects of ASD mutagenesis in
Identifiants
pubmed: 34966783
doi: 10.3389/fmolb.2021.787388
pii: 787388
pmc: PMC8710568
doi:
Types de publication
Journal Article
Langues
eng
Pagination
787388Informations de copyright
Copyright © 2021 McNutt, Gandhi, Shatoff, Roy, Devaraj, Bundschuh and Fredrick.
Déclaration de conflit d'intérêts
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Références
Appl Environ Microbiol. 2013 Mar;79(6):1980-9
pubmed: 23335775
Environ Microbiol. 2017 Jun;19(6):2164-2181
pubmed: 28205313
Proc Natl Acad Sci U S A. 1987 Jul;84(14):4762-6
pubmed: 2440028
Proc Natl Acad Sci U S A. 1987 Jul;84(14):4757-61
pubmed: 2440027
Cell. 2014 Apr 24;157(3):624-35
pubmed: 24766808
J Mol Biol. 1994 Jan 7;235(1):173-84
pubmed: 8289239
RNA. 1996 Dec;2(12):1270-85
pubmed: 8972775
EMBO J. 1988 Dec 20;7(13):4383-8
pubmed: 2468489
Proc Natl Acad Sci U S A. 1975 Dec;72(12):4734-8
pubmed: 1107998
Proc Natl Acad Sci U S A. 2011 Jun 21;108(25):10156-61
pubmed: 21646538
Mol Cell. 2005 Apr 29;18(3):319-29
pubmed: 15866174
RNA. 2005 Nov;11(11):1624-32
pubmed: 16177132
RNA. 2007 Dec;13(12):2348-55
pubmed: 17942743
Mol Cell. 2006 Apr 7;22(1):105-15
pubmed: 16600874
Cold Spring Harb Symp Quant Biol. 1987;52:687-93
pubmed: 3135981
Mol Microbiol. 1992 May;6(9):1105-14
pubmed: 1375309
Nucleic Acids Res. 2021 Sep 14;:
pubmed: 34520557
Nucleic Acids Res. 2014 Feb;42(4):2646-59
pubmed: 24234441
J Bacteriol. 1996 Feb;178(3):583-90
pubmed: 8550486
PLoS One. 2011;6(8):e22914
pubmed: 21857964
Annu Rev Genet. 2004;38:749-70
pubmed: 15568992
Proc Natl Acad Sci U S A. 2009 Sep 1;106(35):14843-8
pubmed: 19706445
Nature. 1986 Jul 17-23;322(6076):273-5
pubmed: 3736654
Nucleic Acids Res. 2017 Apr 20;45(7):3922-3931
pubmed: 28334743
EMBO Rep. 2002 Apr;3(4):373-7
pubmed: 11897659
Mol Microbiol. 2010 Dec;78(6):1500-9
pubmed: 21143320
Proc Natl Acad Sci U S A. 1974 Apr;71(4):1342-6
pubmed: 4598299
Nucleic Acids Res. 2019 Sep 5;47(15):8301-8317
pubmed: 31265110
Nature. 1995 Sep 28;377(6547):309-14
pubmed: 7566085
Nucleic Acids Res. 2021 Jan 11;49(1):547-567
pubmed: 33330920
Cell. 2004 May 28;117(5):589-99
pubmed: 15163407
Nucleic Acids Res. 2021 Jul 2;49(W1):W293-W296
pubmed: 33885785
Proc Natl Acad Sci U S A. 2010 Apr 6;107(14):6382-7
pubmed: 20308567
J Bacteriol. 2008 Apr;190(7):2597-606
pubmed: 18245285
Cell Syst. 2015 Jul 29;1(1):62-71
pubmed: 26918244
Nucleic Acids Res. 2019 Nov 18;47(20):10477-10488
pubmed: 31602466
Appl Environ Microbiol. 2009 Nov;75(21):6864-75
pubmed: 19717629
G3 (Bethesda). 2015 Oct 04;5(12):2555-7
pubmed: 26438293
Methods Enzymol. 2013;530:159-72
pubmed: 24034320
Mol Biol Evol. 2020 Oct 1;37(10):2918-2930
pubmed: 32437534
Cell. 2016 Sep 22;167(1):133-144.e13
pubmed: 27662086
Open Biol. 2017 Jan;7(1):
pubmed: 28100663
Proc Natl Acad Sci U S A. 1990 Feb;87(3):1042-6
pubmed: 2405392
Proc Natl Acad Sci U S A. 2005 Nov 15;102(46):16620-5
pubmed: 16269538
BMC Bioinformatics. 2002;3:2
pubmed: 11869452
Nat Struct Mol Biol. 2007 Jan;14(1):30-6
pubmed: 17159993
Bioinformatics. 2006 Oct 15;22(20):2463-5
pubmed: 16895933
Nat Chem Biol. 2005 Aug;1(3):159-66
pubmed: 16408021
Nat Methods. 2009 May;6(5):343-5
pubmed: 19363495