Building FAIR Functionality: Annotating Events in Time Series Data Using Hierarchical Event Descriptors (HED).

BIDS EEG Event annotation FAIR HED HED-3G Hierarchical Event Descriptors Neuroimaging

Journal

Neuroinformatics
ISSN: 1559-0089
Titre abrégé: Neuroinformatics
Pays: United States
ID NLM: 101142069

Informations de publication

Date de publication:
04 2022
Historique:
accepted: 26 07 2021
pubmed: 1 1 2022
medline: 12 10 2022
entrez: 31 12 2021
Statut: ppublish

Résumé

Human electrophysiological and related time series data are often acquired in complex, event-rich environments. However, the resulting recorded brain or other dynamics are often interpreted in relation to more sparsely recorded or subsequently-noted events. Currently a substantial gap exists between the level of event description required by current digital data archiving standards and the level of annotation required for successful analysis of event-related data across studies, environments, and laboratories. Manifold challenges must be addressed, most prominently ontological clarity, vocabulary extensibility, annotation tool availability, and overall usability, to allow and promote sharing of data with an effective level of descriptive detail for labeled events. Motivating data authors to perform the work needed to adequately annotate their data is a key challenge. This paper describes new developments in the Hierarchical Event Descriptor (HED) system for addressing these issues. We recap the evolution of HED and its acceptance by the Brain Imaging Data Structure (BIDS) movement, describe the recent release of HED-3G, a third generation HED tools and design framework, and discuss directions for future development. Given consistent, sufficiently detailed, tool-enabled, field-relevant annotation of the nature of recorded events, prospects are bright for large-scale analysis and modeling of aggregated time series data, both in behavioral and brain imaging sciences and beyond.

Identifiants

pubmed: 34970709
doi: 10.1007/s12021-021-09537-4
pii: 10.1007/s12021-021-09537-4
pmc: PMC9546996
doi:

Types de publication

Journal Article Research Support, U.S. Gov't, Non-P.H.S. Research Support, Non-U.S. Gov't Research Support, N.I.H., Extramural

Langues

eng

Sous-ensembles de citation

IM

Pagination

463-481

Commentaires et corrections

Type : ErratumIn

Informations de copyright

© 2021. The Author(s).

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Auteurs

Kay Robbins (K)

Department of Computer Science, University of Texas At San Antonio, San Antonio, USA.

Dung Truong (D)

Swartz Center for Computational Neuroscience, Institute for Neural Computation, University of California San Diego, San Diego, USA.

Alexander Jones (A)

Department of Computer Science, University of Texas At San Antonio, San Antonio, USA.

Ian Callanan (I)

Department of Computer Science, University of Texas At San Antonio, San Antonio, USA.

Scott Makeig (S)

Swartz Center for Computational Neuroscience, Institute for Neural Computation, University of California San Diego, San Diego, USA. smakeig@ucsd.edu.

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Classifications MeSH