Context-specific emergence and growth of the SARS-CoV-2 Delta variant.


Journal

medRxiv : the preprint server for health sciences
Titre abrégé: medRxiv
Pays: United States
ID NLM: 101767986

Informations de publication

Date de publication:
21 Dec 2021
Historique:
entrez: 4 1 2022
pubmed: 5 1 2022
medline: 5 1 2022
Statut: epublish

Résumé

The Delta variant of concern of SARS-CoV-2 has spread globally causing large outbreaks and resurgences of COVID-19 cases

Identifiants

pubmed: 34981069
doi: 10.1101/2021.12.14.21267606
pmc: PMC8722612
pii:
doi:

Types de publication

Preprint

Langues

eng

Subventions

Organisme : NIAID NIH HHS
ID : U19 AI135995
Pays : United States
Organisme : Medical Research Council
ID : MC_PC_19012
Pays : United Kingdom
Organisme : NIAID NIH HHS
ID : R01 AI153044
Pays : United States
Organisme : Medical Research Council
ID : MR/S019510/1
Pays : United Kingdom
Organisme : Wellcome Trust
Pays : United Kingdom
Organisme : Medical Research Council
ID : MR/R015600/1
Pays : United Kingdom

Commentaires et corrections

Type : UpdateIn

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Auteurs

John T McCrone (JT)

Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK.
contributed equally as first authors.

Verity Hill (V)

Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK.
contributed equally as first authors.

Sumali Bajaj (S)

Department of Zoology, University of Oxford, Oxford, UK.
contributed equally as first authors.

Rosario Evans Pena (RE)

Department of Zoology, University of Oxford, Oxford, UK.
contributed equally as first authors.

Ben C Lambert (BC)

Department of Computer Science, University of Oxford, Oxford, UK.

Rhys Inward (R)

Department of Zoology, University of Oxford, Oxford, UK.
MRC Centre of Global Infectious Disease Analysis, Jameel Institute for Disease and Emergency Analytics, Imperial College London, London, UK.

Samir Bhatt (S)

MRC Centre of Global Infectious Disease Analysis, Jameel Institute for Disease and Emergency Analytics, Imperial College London, London, UK.
Section of Epidemiology, Department of Public Health, University of Copenhagen, Copenhagen, Denmark.

Erik Volz (E)

MRC Centre of Global Infectious Disease Analysis, Jameel Institute for Disease and Emergency Analytics, Imperial College London, London, UK.

Christopher Ruis (C)

Molecular Immunity Unit, Department of Medicine, Cambridge University, Cambridge, UK.

Simon Dellicour (S)

Spatial Epidemiology Lab (SpELL), Université Libre de Bruxelles, Bruxelles, Belgium.
Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium.

Guy Baele (G)

Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium.

Alexander E Zarebski (AE)

Department of Zoology, University of Oxford, Oxford, UK.

Adam Sadilek (A)

Google, Mountain View, CA, USA.

Neo Wu (N)

Google, Mountain View, CA, USA.

Aaron Schneider (A)

Google, Mountain View, CA, USA.

Xiang Ji (X)

Department of Mathematics, School of Science & Engineering, Tulane University, New Orleans, LA, USA.

Jayna Raghwani (J)

Department of Zoology, University of Oxford, Oxford, UK.

Ben Jackson (B)

Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK.

Rachel Colquhoun (R)

Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK.

Áine O'Toole (Á)

Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK.

Thomas P Peacock (TP)

Department of Infectious Disease, Imperial College London, London, UK.
UK Health Security Agency, London, UK.

Kate Twohig (K)

UK Health Security Agency, London, UK.

Simon Thelwall (S)

UK Health Security Agency, London, UK.

Gavin Dabrera (G)

UK Health Security Agency, London, UK.

Richard Myers (R)

UK Health Security Agency, London, UK.

Nuno R Faria (NR)

Department of Zoology, University of Oxford, Oxford, UK.
MRC Centre of Global Infectious Disease Analysis, Jameel Institute for Disease and Emergency Analytics, Imperial College London, London, UK.
Instituto de Medicina Tropical, Faculdade de Medicina da Universidade de Sao Paulo, Sao Paulo, Brazil.

Carmen Huber (C)

BlueDot, Toronto, Canada.

Isaac I Bogoch (II)

Divisions of Internal Medicine & Infectious Diseases, Toronto General Hospital, University Health Network, Toronto, Canada.
Department of Medicine, Division of Infectious Diseases, University of Toronto, ON, Canada.

Kamran Khan (K)

BlueDot, Toronto, Canada.
Department of Medicine, Division of Infectious Diseases, University of Toronto, ON, Canada.
Li Ka Shing Knowledge Institute, St. Michael's Hospital, Toronto, ON, Canada.

Louis du Plessis (L)

Department of Zoology, University of Oxford, Oxford, UK.

Jeffrey C Barrett (JC)

Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.

David M Aanensen (DM)

Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.
Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, UK.

Wendy S Barclay (WS)

Department of Infectious Disease, Imperial College London, London, UK.

Meera Chand (M)

UK Health Security Agency, London, UK.

Thomas Connor (T)

Pathogen Genomics Unit, Public Health Wales NHS Trust, Cardiff, UK.
School of Biosciences, The Sir Martin Evans Building, Cardiff University, Cardiff, UK.
Quadram Institute, Norwich, UK.

Nicholas J Loman (NJ)

Institute of Microbiology and Infection, University of Birmingham, Birmingham, UK.

Marc A Suchard (MA)

Departments of Biostatistics, Biomathematics and Human Genetics, University of California, Los Angeles, Los Angeles, CA, USA.

Oliver G Pybus (OG)

Department of Zoology, University of Oxford, Oxford, UK.
Department of Pathobiology and Population Sciences, Royal Veterinary College London, London, UK.
jointly supervised this work.

Andrew Rambaut (A)

Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK.
jointly supervised this work.

Moritz U G Kraemer (MUG)

Department of Zoology, University of Oxford, Oxford, UK.
jointly supervised this work.

Classifications MeSH