Destabilization of the Bacterial Interactome Identifies Nutrient Restriction-Induced Dysbiosis in Insect Guts.

bacterial microbiome beta-diversity black soldier fly co-occurrence network dispersion dysbiosis gut interactome keystone species nutrient restriction

Journal

Microbiology spectrum
ISSN: 2165-0497
Titre abrégé: Microbiol Spectr
Pays: United States
ID NLM: 101634614

Informations de publication

Date de publication:
23 02 2022
Historique:
pubmed: 6 1 2022
medline: 17 3 2022
entrez: 5 1 2022
Statut: ppublish

Résumé

Stress-associated dysbiosis of microbiome can have several configurations that, under an energy landscape conceptual framework, can change from one configuration to another due to different alternating selective forces. It has been proposed-according to the Anna Karenina Principle-that in stressed individuals the microbiome are more dispersed (i.e., with a higher within-beta diversity), evidencing the grade of dispersion as indicator of microbiome dysbiosis. We hypothesize that although dysbiosis leads to different microbial communities in terms of beta diversity, these are not necessarily differently dispersed (within-beta diversity), but they form disrupted networks that make them less resilient to stress. To test our hypothesis, we select nutrient restriction (NR) stress that impairs host fitness but does not introduce overt microbiome selectors, such as toxic compounds and pathogens. We fed the polyphagous black soldier fly,

Identifiants

pubmed: 34985334
doi: 10.1128/spectrum.01580-21
pmc: PMC8729773
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

e0158021

Références

Proc Natl Acad Sci U S A. 2017 Jul 3;114(27):E5362-E5369
pubmed: 28630299
Science. 2018 Nov 16;362(6416):776-780
pubmed: 30442802
Environ Entomol. 2015 Apr;44(2):406-10
pubmed: 26313195
Nature. 2012 Sep 13;489(7415):220-30
pubmed: 22972295
Appl Environ Microbiol. 2018 Aug 17;84(17):
pubmed: 29959246
Nature. 2016 Jan 14;529(7585):212-5
pubmed: 26762459
Environ Microbiol Rep. 2017 Apr;9(2):91-103
pubmed: 27886661
Microbiome. 2018 Jan 3;6(1):3
pubmed: 29298729
PLoS One. 2017 Aug 3;12(8):e0182533
pubmed: 28771577
Microbiome. 2020 Feb 1;8(1):11
pubmed: 32007096
Nat Rev Genet. 2011 Dec 16;13(1):47-58
pubmed: 22179717
Front Microbiol. 2020 Nov 23;11:582867
pubmed: 33329446
Front Microbiol. 2020 Aug 12;11:1965
pubmed: 32903451
Environ Entomol. 2011 Feb;40(1):30-5
pubmed: 22182608
Front Microbiol. 2014 May 20;5:219
pubmed: 24904535
Front Microbiol. 2020 May 21;11:993
pubmed: 32508795
Microb Ecol. 2019 May;77(4):913-930
pubmed: 30430196
Appl Environ Microbiol. 2007 Jun;73(11):3470-9
pubmed: 17400769
Science. 2015 May 22;348(6237):1262073
pubmed: 25999517
Aging Cell. 2010 Feb;9(1):92-5
pubmed: 19878144
Animals (Basel). 2019 Apr 19;9(4):
pubmed: 31010233
Nat Rev Microbiol. 2012 Jul 16;10(8):538-50
pubmed: 22796884
Nat Rev Immunol. 2017 Apr;17(4):219-232
pubmed: 28260787
Science. 2015 Nov 6;350(6261):663-6
pubmed: 26542567
Nat Protoc. 2012 Mar 15;7(4):670-85
pubmed: 22422314
Curr Microbiol. 2021 Jan;78(1):303-315
pubmed: 33141316
Waste Manag. 2018 Dec;82:302-318
pubmed: 30509593
Chemosphere. 2019 Nov;235:248-259
pubmed: 31260865
PLoS One. 2015 Jan 30;10(1):e0117439
pubmed: 25635833
Nat Commun. 2018 Aug 2;9(1):3033
pubmed: 30072764
Elife. 2018 Jun 19;7:
pubmed: 29916366
Nat Rev Microbiol. 2017 Oct;15(10):630-638
pubmed: 28626231
Nat Methods. 2013 Oct;10(10):996-8
pubmed: 23955772
Nat Microbiol. 2017 Aug 24;2:17121
pubmed: 28836573
PLoS Comput Biol. 2012;8(7):e1002606
pubmed: 22807668
Nature. 2012 May 09;486(7402):222-7
pubmed: 22699611
Nature. 2014 Jan 23;505(7484):559-63
pubmed: 24336217
Proc Natl Acad Sci U S A. 2018 Jan 16;115(3):457-465
pubmed: 29298915
Cell Tissue Res. 2007 Nov;330(2):345-59
pubmed: 17661086
mBio. 2017 Oct 10;8(5):
pubmed: 29018121
Cell Res. 2020 Jan;30(1):50-60
pubmed: 31767972
Bioinformatics. 2009 Nov 1;25(21):2857-9
pubmed: 19729372
PLoS One. 2015 Jun 26;10(6):e0130334
pubmed: 26115349
Microorganisms. 2021 Mar 06;9(3):
pubmed: 33800927
Am J Physiol Endocrinol Metab. 2016 Jun 1;310(11):E982-93
pubmed: 27117007
Front Microbiol. 2018 Aug 10;9:1818
pubmed: 30147679
Appl Environ Microbiol. 2018 Apr 16;84(9):
pubmed: 29475866
J Insect Physiol. 2014 Aug;67:64-9
pubmed: 24971929
Science. 2011 Oct 7;334(6052):105-8
pubmed: 21885731
Appl Environ Microbiol. 2004 Oct;70(10):6147-56
pubmed: 15466561
FEMS Microbiol Ecol. 2007 Nov;62(2):142-60
pubmed: 17892477
PLoS Genet. 2011 Sep;7(9):e1002272
pubmed: 21966276
J Med Entomol. 2013 May;50(3):647-58
pubmed: 23802462
BMC Bioinformatics. 2012 May 30;13:113
pubmed: 22646978
Cell Rep. 2015 Sep 8;12(10):1656-67
pubmed: 26321641
Sci Rep. 2019 Mar 11;9(1):4078
pubmed: 30858577
Dev Comp Immunol. 2018 Jan;78:141-148
pubmed: 28966127
Microb Biotechnol. 2019 May;12(3):528-543
pubmed: 30884189
PLoS One. 2012;7(7):e36978
pubmed: 22815679
Microorganisms. 2020 Jun 15;8(6):
pubmed: 32549385
Waste Manag. 2019 Mar 1;86:114-122
pubmed: 30902235
PLoS Pathog. 2019 Oct 31;15(10):e1007891
pubmed: 31671152
J Sci Food Agric. 2018 Dec;98(15):5776-5784
pubmed: 29752718
Arch Insect Biochem Physiol. 2018 Oct;99(2):e21481
pubmed: 29956367
Appl Environ Microbiol. 2014 Sep;80(17):5254-64
pubmed: 24928884
Sci Rep. 2017 Sep 12;7(1):11335
pubmed: 28900218
Environ Microbiol. 2019 Nov;21(11):4343-4359
pubmed: 31502415
Front Microbiol. 2020 Jul 07;11:1538
pubmed: 32774330
mBio. 2018 Mar 6;9(2):
pubmed: 29511074
Environ Entomol. 2017 Dec 8;46(6):1415-1423
pubmed: 29040452
Insects. 2017 May 31;8(2):
pubmed: 28561763
Nat Methods. 2010 May;7(5):335-6
pubmed: 20383131
Cell Tissue Res. 2019 Nov;378(2):221-238
pubmed: 31053891
iScience. 2020 Apr 24;23(4):101007
pubmed: 32305861
ISME J. 2018 May;12(5):1188-1198
pubmed: 29335640
J Microbiol Methods. 2015 Dec;119:110-25
pubmed: 26476138
Curr Microbiol. 2011 May;62(5):1390-9
pubmed: 21267722
Appl Environ Microbiol. 2019 Jan 9;85(2):
pubmed: 30504212
Microorganisms. 2021 Jul 21;9(8):
pubmed: 34442632
Appl Environ Microbiol. 2015 Nov 13;82(2):671-9
pubmed: 26567306
Food Res Int. 2021 Feb;140:110028
pubmed: 33648256

Auteurs

Ramona Marasco (R)

Biological and Environmental Sciences and Engineering Division (BESE), Red Sea Research Center (RSRC), King Abdullah University of Science and Technologygrid.45672.32 (KAUST), Thuwal, Saudi Arabia.

Marco Fusi (M)

Biological and Environmental Sciences and Engineering Division (BESE), Red Sea Research Center (RSRC), King Abdullah University of Science and Technologygrid.45672.32 (KAUST), Thuwal, Saudi Arabia.

Matteo Callegari (M)

Biological and Environmental Sciences and Engineering Division (BESE), Red Sea Research Center (RSRC), King Abdullah University of Science and Technologygrid.45672.32 (KAUST), Thuwal, Saudi Arabia.

Costanza Jucker (C)

Department of Food, Environmental and Nutritional Sciences (DeFENS), University of Milangrid.4708.b, Milan, Italy.

Francesca Mapelli (F)

Department of Food, Environmental and Nutritional Sciences (DeFENS), University of Milangrid.4708.b, Milan, Italy.

Sara Borin (S)

Department of Food, Environmental and Nutritional Sciences (DeFENS), University of Milangrid.4708.b, Milan, Italy.

Sara Savoldelli (S)

Department of Food, Environmental and Nutritional Sciences (DeFENS), University of Milangrid.4708.b, Milan, Italy.

Daniele Daffonchio (D)

Biological and Environmental Sciences and Engineering Division (BESE), Red Sea Research Center (RSRC), King Abdullah University of Science and Technologygrid.45672.32 (KAUST), Thuwal, Saudi Arabia.

Elena Crotti (E)

Department of Food, Environmental and Nutritional Sciences (DeFENS), University of Milangrid.4708.b, Milan, Italy.

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Classifications MeSH