Machine Learning Based Prediction of COVID-19 Mortality Suggests Repositioning of Anticancer Drug for Treating Severe Cases.
Covid19
Drug repositioning
Explainable ai
Machine learning
Precision medicine
Journal
Artificial intelligence in the life sciences
ISSN: 2667-3185
Titre abrégé: Artif Intell Life Sci
Pays: Netherlands
ID NLM: 9918317785506676
Informations de publication
Date de publication:
Dec 2021
Dec 2021
Historique:
received:
08
11
2021
revised:
22
11
2021
accepted:
22
11
2021
entrez:
6
1
2022
pubmed:
7
1
2022
medline:
7
1
2022
Statut:
ppublish
Résumé
Despite available vaccinations COVID-19 case numbers around the world are still growing, and effective medications against severe cases are lacking. In this work, we developed a machine learning model which predicts mortality for COVID-19 patients using data from the multi-center 'Lean European Open Survey on SARS-CoV-2-infected patients' (LEOSS) observational study (>100 active sites in Europe, primarily in Germany), resulting into an AUC of almost 80%. We showed that molecular mechanisms related to dementia, one of the relevant predictors in our model, intersect with those associated to COVID-19. Most notably, among these molecules was tyrosine kinase 2 (TYK2), a protein that has been patented as drug target in Alzheimer's Disease but also genetically associated with severe COVID-19 outcomes. We experimentally verified that anti-cancer drugs Sorafenib and Regorafenib showed a clear anti-cytopathic effect in Caco2 and VERO-E6 cells and can thus be regarded as potential treatments against COVID-19. Altogether, our work demonstrates that interpretation of machine learning based risk models can point towards drug targets and new treatment options, which are strongly needed for COVID-19.
Identifiants
pubmed: 34988543
doi: 10.1016/j.ailsci.2021.100020
pii: S2667-3185(21)00020-9
pmc: PMC8677630
doi:
Types de publication
Journal Article
Langues
eng
Pagination
100020Commentaires et corrections
Type : ErratumIn
Informations de copyright
© 2021 The Authors. Published by Elsevier B.V.
Déclaration de conflit d'intérêts
The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.
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