Machine Learning Based Prediction of COVID-19 Mortality Suggests Repositioning of Anticancer Drug for Treating Severe Cases.

Covid19 Drug repositioning Explainable ai Machine learning Precision medicine

Journal

Artificial intelligence in the life sciences
ISSN: 2667-3185
Titre abrégé: Artif Intell Life Sci
Pays: Netherlands
ID NLM: 9918317785506676

Informations de publication

Date de publication:
Dec 2021
Historique:
received: 08 11 2021
revised: 22 11 2021
accepted: 22 11 2021
entrez: 6 1 2022
pubmed: 7 1 2022
medline: 7 1 2022
Statut: ppublish

Résumé

Despite available vaccinations COVID-19 case numbers around the world are still growing, and effective medications against severe cases are lacking. In this work, we developed a machine learning model which predicts mortality for COVID-19 patients using data from the multi-center 'Lean European Open Survey on SARS-CoV-2-infected patients' (LEOSS) observational study (>100 active sites in Europe, primarily in Germany), resulting into an AUC of almost 80%. We showed that molecular mechanisms related to dementia, one of the relevant predictors in our model, intersect with those associated to COVID-19. Most notably, among these molecules was tyrosine kinase 2 (TYK2), a protein that has been patented as drug target in Alzheimer's Disease but also genetically associated with severe COVID-19 outcomes. We experimentally verified that anti-cancer drugs Sorafenib and Regorafenib showed a clear anti-cytopathic effect in Caco2 and VERO-E6 cells and can thus be regarded as potential treatments against COVID-19. Altogether, our work demonstrates that interpretation of machine learning based risk models can point towards drug targets and new treatment options, which are strongly needed for COVID-19.

Identifiants

pubmed: 34988543
doi: 10.1016/j.ailsci.2021.100020
pii: S2667-3185(21)00020-9
pmc: PMC8677630
doi:

Types de publication

Journal Article

Langues

eng

Pagination

100020

Commentaires et corrections

Type : ErratumIn

Informations de copyright

© 2021 The Authors. Published by Elsevier B.V.

Déclaration de conflit d'intérêts

The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

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Auteurs

Thomas Linden (T)

Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53757 Sankt Augustin, Germany.
University of Bonn, Bonn-Aachen International Center for IT, Friedrich Hirzebruch-Allee 6, 53115 Bonn, Germany.

Frank Hanses (F)

Emergency Department, University Hospital Regensburg, 93053 Regensburg, Germany.
Department for Infectious Diseases and Infection Control, University Hospital Regensburg, Germany.

Daniel Domingo-Fernández (D)

Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53757 Sankt Augustin, Germany.

Lauren Nicole DeLong (LN)

Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53757 Sankt Augustin, Germany.
University of Bonn, Bonn-Aachen International Center for IT, Friedrich Hirzebruch-Allee 6, 53115 Bonn, Germany.

Alpha Tom Kodamullil (AT)

Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53757 Sankt Augustin, Germany.

Jochen Schneider (J)

Technical University of Munich, School of Medicine, University Hospital rechts der Isar, Department of Internal Medicine II, 81675 Munich, Germany.

Maria J G T Vehreschild (MJGT)

Department II of Internal Medicine, Infectious Diseases, University Hospital Frankfurt, Goethe University, 60590 Frankfurt, Germany.

Julia Lanznaster (J)

Department of Internal Medicine II, Hospital Passau, Innstraße 76, 94032 Passau, Germany.

Maria Madeleine Ruethrich (MM)

Institute for Infection Medicine and Hospital Hygiene, University Hospital Jena, 07743 Jena, Germany.

Stefan Borgmann (S)

Department of Infectious Diseases and Infection Control, Hospital Ingolstadt, 85049 Ingolstadt, Germany.

Martin Hower (M)

Department of Pneumology, Infectious Diseases and Intensive Care, Klinikum Dortmund gGmbH, Hospital of University Witten / Herdecke, 44137 Dortmund, Germany.

Kai Wille (K)

University Clinic for Haematology, Oncology, Haemostaseology and Palliative Care, Johannes Wesling Medical Centre Minden, 32429 Minden, Germany.

Torsten Feldt (T)

Department of Gastroenterology, Hepatology and Infectious Diseases, University Hospital Düsseldorf, Medical Faculty of Heinrich Heine University Düsseldorf, Moorenstrasse 5, 40225 Düsseldorf, Germany.

Siegbert Rieg (S)

Department of Medicine II, University Hospital Freiburg, 79110 Freiburg, Germany.

Bernd Hertenstein (B)

Department of Medicine II, University Hospital Freiburg, 79110 Freiburg, Germany.

Christoph Wyen (C)

Christoph Wyen, Praxis am Ebertplatz Cologne, 50668 Cologne, Germany.

Christoph Roemmele (C)

Internal Medicine III - Gastroenterology and Infectious Diseases, University Hospital Augsburg, 86156 Augsburg, Germany.

Jörg Janne Vehreschild (JJ)

Department II of Internal Medicine, Infectious Diseases, University Hospital Frankfurt, Goethe University, 60590 Frankfurt, Germany.

Carolin E M Jakob (CEM)

Department I for Internal Medicine, University Hospital of Cologne, University of Cologne, 50931 Cologne, Germany.

Melanie Stecher (M)

Fraunhofer Institute for Translational Medicine and Pharmacologie (ITMP), VolksparkLabs, Schnackenburgallee 114, 22535 Hamburg, Germany.

Maria Kuzikov (M)

Department for Infectious Diseases and Infection Control, University Hospital Regensburg, Germany.

Andrea Zaliani (A)

Department for Infectious Diseases and Infection Control, University Hospital Regensburg, Germany.

Holger Fröhlich (H)

Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, 53757 Sankt Augustin, Germany.
University of Bonn, Bonn-Aachen International Center for IT, Friedrich Hirzebruch-Allee 6, 53115 Bonn, Germany.

Classifications MeSH