Rapid Detection and Characterization of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Omicron Variant in a Returning Traveler.

COVID-19 / diagnosis Genome, Viral Humans Polymerase Chain Reaction SARS-CoV-2 / genetics
Omicron SARS-CoV-2 genomic surveillance multiplex PCR vaccine

Journal

Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
ISSN: 1537-6591
Titre abrégé: Clin Infect Dis
Pays: United States
ID NLM: 9203213

Informations de publication

Date de publication:
24 08 2022
Historique:
received: 08 12 2021
pubmed: 18 1 2022
medline: 30 8 2022
entrez: 17 1 2022
Statut: ppublish

Résumé

We describe rapid detection of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Omicron variant using targeted spike single-nucleotide polymorphism polymerase chain reaction and viral genome sequencing. This case occurred in a fully vaccinated and boosted returning traveler with mild symptoms who was identified through community surveillance rather than clinical care.

Identifiants

DOI: 10.1093/cid/ciac032 PMID: 35037030 PMC: PMC8807227
pubmed: 35037030
pii: 6509065
doi: 10.1093/cid/ciac032
pmc: PMC8807227
doi:

Types de publication

Case Reports Journal Article Research Support, U.S. Gov't, P.H.S. Research Support, N.I.H., Intramural Research Support, Non-U.S. Gov't Research Support, N.I.H., Extramural

Langues

eng

Sous-ensembles de citation

IM

Pagination

e350-e353

Subventions

Organisme : NIH HHS
ID : P51 OD011132
Pays : United States
Organisme : NCATS NIH HHS
ID : UL1 TR002378
Pays : United States
Organisme : NIBIB NIH HHS
ID : U54 EB027690
Pays : United States
Organisme : NIAID NIH HHS
ID : 75N93021C00017
Pays : United States
Organisme : NIAID NIH HHS
ID : U19 AI057266
Pays : United States
Organisme : NIAID NIH HHS
ID : HHSN272201400004C
Pays : United States
Organisme : NCI NIH HHS
ID : U54 CA260563
Pays : United States

Informations de copyright

© The Author(s) 2022. Published by Oxford University Press for the Infectious Diseases Society of America.

Références

Nature. 2021 Apr;592(7854):438-443
pubmed: 33690265
Emerg Infect Dis. 2020 Jul;26(7):1633-1635
pubmed: 32294051
J Clin Microbiol. 2020 Dec 17;59(1):
pubmed: 33046529
Wellcome Open Res. 2021 May 19;6:121
pubmed: 34095513
J Clin Microbiol. 2021 Nov 18;59(12):e0144621
pubmed: 34432488
Viruses. 2021 Aug 26;13(9):
pubmed: 34578275
MMWR Morb Mortal Wkly Rep. 2021 Jan 22;70(3):95-99
pubmed: 33476315

Auteurs

Mary Elizabeth Sexton (ME)

Division of Infectious Diseases, Department of Medicine, Emory University School of Medicine, Atlanta, Georgia, USA.

Jesse J Waggoner (JJ)

Division of Infectious Diseases, Department of Medicine, Emory University School of Medicine, Atlanta, Georgia, USA.

Ludy R Carmola (LR)

Department of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, Georgia, USA.

Phuong Vi Nguyen (PV)

Division of Infectious Diseases, Department of Medicine, Emory University School of Medicine, Atlanta, Georgia, USA.

Ethan Wang (E)

Department of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, Georgia, USA.

Dara Khosravi (D)

Department of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, Georgia, USA.
ORCID: 0000-0003-3422-5315

Azmain Taz (A)

Department of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, Georgia, USA.

Robert A Arthur (RA)

Emory Integrated Computational Core, Emory Integrated Core Facilities, Emory University, Atlanta, Georgia, USA.

Mit Patel (M)

Center for Childhood Infections and Vaccines of Children's Healthcare of Atlanta, Department of Pediatrics, Emory University School of Medicine, Atlanta, Georgia, USA.

Venkata Viswanadh Edara (VV)

Center for Childhood Infections and Vaccines of Children's Healthcare of Atlanta, Department of Pediatrics, Emory University School of Medicine, Atlanta, Georgia, USA.
Emory Vaccine Center, Emory University, Atlanta, Georgia, USA.
Yerkes National Primate Research Center, Atlanta, Georgia, USA.

Stephanie L Foster (SL)

Center for Childhood Infections and Vaccines of Children's Healthcare of Atlanta, Department of Pediatrics, Emory University School of Medicine, Atlanta, Georgia, USA.
Emory Vaccine Center, Emory University, Atlanta, Georgia, USA.
Yerkes National Primate Research Center, Atlanta, Georgia, USA.

Kathryn M Moore (KM)

Center for Childhood Infections and Vaccines of Children's Healthcare of Atlanta, Department of Pediatrics, Emory University School of Medicine, Atlanta, Georgia, USA.
Emory Vaccine Center, Emory University, Atlanta, Georgia, USA.
Yerkes National Primate Research Center, Atlanta, Georgia, USA.

Matthew Gagne (M)

Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA.

Jesmine Roberts-Torres (J)

Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA.

Amy R Henry (AR)

Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA.

Sucheta Godbole (S)

Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA.

Daniel C Douek (DC)

Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA.

Nadine Rouphael (N)

Division of Infectious Diseases, Department of Medicine, Emory University School of Medicine, Atlanta, Georgia, USA.
Hope Clinic of the Emory Vaccine Center, Emory University School of Medicine, Decatur, Georgia, USA.
ORCID: 0000-0002-2512-7919

Mehul S Suthar (MS)

Center for Childhood Infections and Vaccines of Children's Healthcare of Atlanta, Department of Pediatrics, Emory University School of Medicine, Atlanta, Georgia, USA.
Emory Vaccine Center, Emory University, Atlanta, Georgia, USA.
Yerkes National Primate Research Center, Atlanta, Georgia, USA.
Department of Microbiology and Immunology, Emory University, Atlanta, Georgia, USA.

Anne Piantadosi (A)

Division of Infectious Diseases, Department of Medicine, Emory University School of Medicine, Atlanta, Georgia, USA.
Department of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, Georgia, USA.
ORCID: 0000-0002-5942-1534

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Classifications MeSH

questionsmedicales.fr › Maladies de l'appareil respiratoire › Infections de l'appareil respiratoire › Pneumopathie infectieuse › Pneumopathie virale › COVID-19 › Rapid Detection and Characterization of Severe...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Génome microbien › Génome viral › Rapid Detection and Characterization of Severe...
questionsmedicales.fr › Eucaryotes › Animaux › Chordés › Vertébrés › Mammifères › Eutheria › Primates › Haplorhini › Catarrhini › Hominidae › Humains › Rapid Detection and Characterization of Severe...
questionsmedicales.fr › Techniques d'investigation › Techniques génétiques › Techniques d'amplification d'acides nucléiques › Réaction de polymérisation en chaîne › Rapid Detection and Characterization of Severe...
questionsmedicales.fr › Virus › Virus à ARN › Virus à ARN à brin positif › Nidovirales › Coronaviridae › Coronavirus › Betacoronavirus › Virus du SRAS › SARS-CoV-2 › Rapid Detection and Characterization of Severe...