Genetic Alterations in Mitochondrial DNA Are Complementary to Nuclear DNA Mutations in Pheochromocytomas.

genetic alterations mitochondrial DNA pheochromocytomas and paragangliomas

Journal

Cancers
ISSN: 2072-6694
Titre abrégé: Cancers (Basel)
Pays: Switzerland
ID NLM: 101526829

Informations de publication

Date de publication:
06 Jan 2022
Historique:
received: 08 11 2021
revised: 14 12 2021
accepted: 27 12 2021
entrez: 21 1 2022
pubmed: 22 1 2022
medline: 22 1 2022
Statut: epublish

Résumé

Somatic mutations, copy-number variations, and genome instability of mitochondrial DNA (mtDNA) have been reported in different types of cancers and are suggested to play important roles in cancer development and metastasis. However, there is scarce information about pheochromocytomas and paragangliomas (PCCs/PGLs) formation. To determine the potential roles of mtDNA alterations in sporadic PCCs/PGLs, we analyzed a panel of 26 nuclear susceptibility genes and the entire mtDNA sequence of seventy-seven human tumors, using next-generation sequencing, and compared the results with normal adrenal medulla tissues. We also performed an analysis of copy-number alterations, large mtDNA deletion, and gene and protein expression. Our results revealed that 53.2% of the tumors harbor a mutation in at least one of the targeted susceptibility genes, and 16.9% harbor complementary mitochondrial mutations. More than 50% of the mitochondrial mutations were novel and predicted pathogenic, affecting mitochondrial oxidative phosphorylation. Large deletions were found in 26% of tumors, and depletion of mtDNA occurred in more than 87% of PCCs/PGLs. The reduction of the mitochondrial number was accompanied by a reduced expression of the regulators that promote mitochondrial biogenesis (PCG1α, NRF1, and TFAM). Further, P62 and LC3a gene expression suggested increased mitophagy, which is linked to mitochondrial dysfunction. The pathogenic role of these finding remains to be shown, but we suggest a complementarity and a potential contributing role in PCCs/PGLs tumorigenesis.

Sections du résumé

BACKGROUND BACKGROUND
Somatic mutations, copy-number variations, and genome instability of mitochondrial DNA (mtDNA) have been reported in different types of cancers and are suggested to play important roles in cancer development and metastasis. However, there is scarce information about pheochromocytomas and paragangliomas (PCCs/PGLs) formation.
MATERIAL METHODS
To determine the potential roles of mtDNA alterations in sporadic PCCs/PGLs, we analyzed a panel of 26 nuclear susceptibility genes and the entire mtDNA sequence of seventy-seven human tumors, using next-generation sequencing, and compared the results with normal adrenal medulla tissues. We also performed an analysis of copy-number alterations, large mtDNA deletion, and gene and protein expression.
RESULTS RESULTS
Our results revealed that 53.2% of the tumors harbor a mutation in at least one of the targeted susceptibility genes, and 16.9% harbor complementary mitochondrial mutations. More than 50% of the mitochondrial mutations were novel and predicted pathogenic, affecting mitochondrial oxidative phosphorylation. Large deletions were found in 26% of tumors, and depletion of mtDNA occurred in more than 87% of PCCs/PGLs. The reduction of the mitochondrial number was accompanied by a reduced expression of the regulators that promote mitochondrial biogenesis (PCG1α, NRF1, and TFAM). Further, P62 and LC3a gene expression suggested increased mitophagy, which is linked to mitochondrial dysfunction.
CONCLUSION CONCLUSIONS
The pathogenic role of these finding remains to be shown, but we suggest a complementarity and a potential contributing role in PCCs/PGLs tumorigenesis.

Identifiants

pubmed: 35053433
pii: cancers14020269
doi: 10.3390/cancers14020269
pmc: PMC8773562
pii:
doi:

Types de publication

Journal Article

Langues

eng

Subventions

Organisme : ALF
ID : RÖ-532021
Organisme : FORSS
ID : FORSS-481781
Organisme : LIU-Cancer
ID : LIU-Cancer-2019

Références

Science. 2008 May 2;320(5876):661-4
pubmed: 18388260
Endocr Relat Cancer. 2011 Dec 01;18(6):R253-76
pubmed: 22041710
Clin Sci (Lond). 2016 Mar;130(6):393-407
pubmed: 26846578
Hum Mol Genet. 2014 May 1;23(9):2440-6
pubmed: 24334767
Cancer Discov. 2012 May;2(5):401-4
pubmed: 22588877
Endocr Relat Cancer. 2014 Jun;21(3):495-504
pubmed: 24741025
Oncol Lett. 2017 Nov;14(5):5179-5188
pubmed: 29098023
J Invest Dermatol. 2013 Mar;133(3):827-830
pubmed: 23096712
Mol Cancer Ther. 2016 May;15(5):774-82
pubmed: 27197257
Cell Res. 2007 Apr;17(4):363-73
pubmed: 17372612
Biomol Detect Quantif. 2017 Aug 31;13:32-39
pubmed: 29021970
Hum Mol Genet. 2012 Dec 15;21(26):5406-16
pubmed: 23010473
Mitochondrion. 2015 Nov;25:17-27
pubmed: 26349026
Neuroendocrinology. 2017;104(1):72-84
pubmed: 26895241
Trends Biochem Sci. 2017 Aug;42(8):625-639
pubmed: 28285835
Int J Mol Sci. 2018 May 08;19(5):
pubmed: 29738493
Oncotarget. 2016 May 24;7(21):31270-83
pubmed: 27121313
Biochem Biophys Res Commun. 2018 Mar 18;497(4):1049-1054
pubmed: 29481798
Front Endocrinol (Lausanne). 2018 Oct 16;9:612
pubmed: 30386298
Hum Mutat. 2011 May;32(5):557-63
pubmed: 21520333
Hum Mol Genet. 2010 Aug 1;19(15):3011-20
pubmed: 20484225
Oncotarget. 2016 May 17;7(20):29166-76
pubmed: 27081694
Hum Mol Genet. 2013 Jun 1;22(11):2169-76
pubmed: 23418310
J Biol Chem. 2019 Apr 5;294(14):5294-5308
pubmed: 30643023
Curr Genomics. 2017 Jun;18(3):255-267
pubmed: 28659721
J Med Genet. 2001 Jan;38(1):58-61
pubmed: 11332403
Int J Endocrinol. 2015;2015:138573
pubmed: 25883647
Cancer Med. 2018 Jun;7(6):2776-2782
pubmed: 29673117
PLoS One. 2014 Apr 04;9(4):e94069
pubmed: 24705504
Int J Mol Sci. 2016 Oct 10;17(10):
pubmed: 27735863
Free Radic Biol Med. 2015 Aug;85:250-8
pubmed: 25979659
Int J Cancer. 2016 May 1;138(9):2201-11
pubmed: 26650627
Oncogene. 2013 Oct;32(40):4814-24
pubmed: 23128392
Cells. 2019 Jan 29;8(2):
pubmed: 30700008
PLoS Comput Biol. 2017 Jun 22;13(6):e1005628
pubmed: 28640805
Int J Cardiol. 2017 Jan 15;227:201-208
pubmed: 27839819
J Invest Dermatol. 2015 Oct;135(10):2544-2547
pubmed: 26032958
Br J Cancer. 2020 Jan;122(2):168-181
pubmed: 31819197
Cell. 2016 Jul 28;166(3):555-566
pubmed: 27471965
BMC Bioinformatics. 2017 Mar 7;18(1):158
pubmed: 28270093
Front Genet. 2019 May 14;10:435
pubmed: 31139208
J Mol Med (Berl). 2015 Jan;93(1):93-104
pubmed: 25263965
Cardiovasc Res. 2008 Jul 15;79(2):208-17
pubmed: 18430751
Zhonghua Zhong Liu Za Zhi. 2008 Aug;30(8):593-7
pubmed: 19102936
Pigment Cell Melanoma Res. 2012 Nov;25(6):815-8
pubmed: 22889334
Mitochondrion. 2004 Sep;4(5-6):791-8
pubmed: 16120433
PLoS One. 2013 Jul 04;8(7):e67953
pubmed: 23861839
Mol Cells. 2018 Jan 31;41(1):18-26
pubmed: 29370689
Ann Hum Biol. 2007 Jan-Feb;34(1):68-79
pubmed: 17536756
BMC Genomics. 2015 Sep 15;16:691
pubmed: 26369791
J Cell Biol. 2016 Feb 15;212(4):379-87
pubmed: 26858267
Mol Cell. 2017 Feb 2;65(3):527-538.e6
pubmed: 28111015
Hum Mol Genet. 2011 Oct 15;20(20):3974-85
pubmed: 21784903
Lancet Oncol. 2010 Apr;11(4):366-72
pubmed: 20071235
Bioinformatics. 2014 Nov 1;30(21):3115-7
pubmed: 25028726
Anticancer Res. 2019 Dec;39(12):6711-6722
pubmed: 31810936
Mol Carcinog. 2017 Dec;56(12):2593-2600
pubmed: 28688194
Crit Rev Oncol Hematol. 2016 Apr;100:190-208
pubmed: 26839173
Cancer Cell. 2017 Feb 13;31(2):181-193
pubmed: 28162975
Sci Adv. 2020 Mar 18;6(12):eaay3335
pubmed: 32206710
Nucleic Acids Res. 2018 Jan 4;46(D1):D754-D761
pubmed: 29155950
Front Oncol. 2017 Jun 08;7:118
pubmed: 28642839
J Clin Endocrinol Metab. 2014 Jun;99(6):1915-42
pubmed: 24893135
Trends Endocrinol Metab. 2016 Feb;27(2):105-117
pubmed: 26754340
JAMA. 2010 Dec 15;304(23):2611-9
pubmed: 21156949
Mol Cell. 2020 May 7;78(3):382-395.e8
pubmed: 32183942
Brain. 2014 Feb;137(Pt 2):354-65
pubmed: 24163249
Comput Struct Biotechnol J. 2013 Dec 07;6:e201303019
pubmed: 24688727
JAMA Oncol. 2017 Sep 1;3(9):1204-1212
pubmed: 28384794
Br J Cancer. 2011 Apr 12;104(8):1319-24
pubmed: 21427725
J Clin Endocrinol Metab. 2014 Jul;99(7):E1352-60
pubmed: 24694336
Cancer Prev Res (Phila). 2011 May;4(5):638-54
pubmed: 21543342
Elife. 2017 Jan 18;6:
pubmed: 28099114
J Med Genet. 2015 Oct;52(10):647-56
pubmed: 26269449
Sci Signal. 2013 Apr 02;6(269):pl1
pubmed: 23550210
Trends Cancer. 2020 Dec;6(12):1044-1058
pubmed: 32980320
Exp Cell Res. 2014 Jul 1;325(1):38-43
pubmed: 24675282
Elife. 2016 Feb 22;5:
pubmed: 26901439
Toxicol Res. 2014 Dec;30(4):235-42
pubmed: 25584142
Nucleic Acids Res. 2016 Mar 18;44(5):2020-7
pubmed: 26843426
FEBS J. 2017 Jan;284(2):183-195
pubmed: 27462821
Nat Cancer. 2020 Oct;1(10):976-989
pubmed: 33073241
Bioinformatics. 2019 Jun 1;35(11):1978-1980
pubmed: 30376034
Front Microbiol. 2020 May 25;11:1069
pubmed: 32523583
Cancer Lett. 2004 Jan 8;203(1):25-33
pubmed: 14670614
World J Surg. 2018 Feb;42(2):482-489
pubmed: 29159601
J Clin Endocrinol Metab. 2016 Mar;101(3):1034-43
pubmed: 26796762

Auteurs

Mouna Tabebi (M)

Department of Biomedical and Clinical Sciences (BKV), Linköping University, 581 83 Linköping, Sweden.

Małgorzata Łysiak (M)

Department of Biomedical and Clinical Sciences (BKV), Linköping University, 581 83 Linköping, Sweden.

Ravi Kumar Dutta (RK)

Department of Biomedical and Clinical Sciences (BKV), Linköping University, 581 83 Linköping, Sweden.

Sandra Lomazzi (S)

Centre de Ressources Biologiques (CRB) Lorraine, CHRU de Nancy, 54511 Nancy, France.

Maria V Turkina (MV)

Department of Biomedical and Clinical Sciences (BKV), Linköping University, 581 83 Linköping, Sweden.

Laurent Brunaud (L)

Department of Gastrointestinal, Metabolic, and Oncology Surgery (CVMC), Section of Metabolic, Endocrine, and Thyroid Surgery (UMET) at the CHRU Nancy, Hôpital de Brabois, Inserm U1256, Faculté de Médecine, Université de Lorraine, 54511 Vandoeuvre-les-Nancy, France.

Oliver Gimm (O)

Department of Biomedical and Clinical Sciences (BKV), Linköping University, 581 83 Linköping, Sweden.
Department of Surgery and Department of Biomedical and Clinical Sciences (BKV), Linköping University, 581 83 Linköping, Sweden.

Peter Söderkvist (P)

Department of Biomedical and Clinical Sciences (BKV), Linköping University, 581 83 Linköping, Sweden.
Clinical Genomics Linköping, Science for Life Laboratory, Linköping University, 581 83 Linköping, Sweden.

Classifications MeSH