Histone acetylome-wide associations in immune cells from individuals with active Mycobacterium tuberculosis infection.
Acetylation
Adult
Chromatin
Cohort Studies
Female
Genetic Association Studies
Granulocytes
/ immunology
Histones
/ genetics
Humans
Longitudinal Studies
Male
Monocytes
/ immunology
Mycobacterium tuberculosis
/ immunology
Proof of Concept Study
Quantitative Trait Loci
Singapore
South Africa
THP-1 Cells
Tuberculosis
/ genetics
Young Adult
Journal
Nature microbiology
ISSN: 2058-5276
Titre abrégé: Nat Microbiol
Pays: England
ID NLM: 101674869
Informations de publication
Date de publication:
02 2022
02 2022
Historique:
received:
16
09
2021
accepted:
14
12
2021
pubmed:
2
2
2022
medline:
23
2
2022
entrez:
1
2
2022
Statut:
ppublish
Résumé
Host cell chromatin changes are thought to play an important role in the pathogenesis of infectious diseases. Here we describe a histone acetylome-wide association study (HAWAS) of an infectious disease, on the basis of genome-wide H3K27 acetylation profiling of peripheral blood granulocytes and monocytes from persons with active Mycobacterium tuberculosis (Mtb) infection and healthy controls. We detected >2,000 differentially acetylated loci in either cell type in a Singapore Chinese discovery cohort (n = 46), which were validated in a subsequent multi-ethnic Singapore cohort (n = 29), as well as a longitudinal cohort from South Africa (n = 26), thus demonstrating that HAWAS can be independently corroborated. Acetylation changes were correlated with differential gene expression. Differential acetylation was enriched near potassium channel genes, including KCNJ15, which modulates apoptosis and promotes Mtb clearance in vitro. We performed histone acetylation quantitative trait locus (haQTL) analysis on the dataset and identified 69 candidate causal variants for immune phenotypes among granulocyte haQTLs and 83 among monocyte haQTLs. Our study provides proof-of-principle for HAWAS to infer mechanisms of host response to pathogens.
Identifiants
pubmed: 35102304
doi: 10.1038/s41564-021-01049-w
pii: 10.1038/s41564-021-01049-w
pmc: PMC9439955
doi:
Substances chimiques
Chromatin
0
Histones
0
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
312-326Subventions
Organisme : Medical Research Council
ID : FC0012018
Pays : United Kingdom
Organisme : Wellcome Trust
ID : 203135
Pays : United Kingdom
Organisme : Wellcome Trust
ID : 104803
Pays : United Kingdom
Organisme : NIAID NIH HHS
ID : U01 AI115940
Pays : United States
Organisme : Wellcome Trust
ID : FC0012018
Pays : United Kingdom
Organisme : Cancer Research UK
ID : FC0012018
Pays : United Kingdom
Organisme : Wellcome Trust
Pays : United Kingdom
Organisme : NIDA NIH HHS
ID : R01 DA015302
Pays : United States
Commentaires et corrections
Type : CommentIn
Type : ErratumIn
Informations de copyright
© 2022. The Author(s), under exclusive licence to Springer Nature Limited.
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