Excited state absorption of DNA bases in the gas phase and in chloroform solution: a comparative quantum mechanical study.


Journal

Physical chemistry chemical physics : PCCP
ISSN: 1463-9084
Titre abrégé: Phys Chem Chem Phys
Pays: England
ID NLM: 100888160

Informations de publication

Date de publication:
23 Feb 2022
Historique:
pubmed: 11 2 2022
medline: 26 2 2022
entrez: 10 2 2022
Statut: epublish

Résumé

We study the excited state absorption (ESA) properties of the four DNA bases (thymine, cytosine, adenine, and guanine) by different single reference quantum mechanical methods, namely, equation of motion coupled cluster singles and doubles (EOM-CCSD), singles, doubles and perturbative triples (EOM-CC3), and time-dependent density functional theory (TD-DFT), with the long-range corrected CAM-B3LYP functional. Preliminary results at the Tamm-Dancoff (TDA) CAM-B3LYP level using the maximum overlap method (MOM) are reported for thymine. In the gas phase, the three methods predict similar One Photon Absorption (OPA) spectra, which are consistent with the experimental results and with the most accurate computational studies available in the literature. The ESA spectra are then computed for the ππ* states (one for pyrimidine, two for purines) associated with the lowest-energy absorption band, and for the close-lying nπ* state. The EOM-CC3, EOM-CCSD and CAM-B3LYP methods provide similar ESA spectral patterns, which are also in qualitative agreement with literature RASPT2 results. Once validated in the gas phase, TD-CAM-B3LYP has been used to compute the ESA in chloroform, including solvent effects by the polarizable continuum model (PCM). The predicted OPA and ESA spectra in chloroform are very similar to those in the gas phase, most of the bands shifting by less than 0.1 eV, with a small increase of the intensities and a moderate destabilization of the nπ* state. Finally, ESA spectra have been computed from the minima of the lowest energy ππ* state, and found in line with the available experimental transient absorption spectra of the nucleosides in solution, providing further validation of our computational approach.

Identifiants

pubmed: 35142309
doi: 10.1039/d1cp04340d
doi:

Substances chimiques

Guanine 5Z93L87A1R
Chloroform 7V31YC746X
Cytosine 8J337D1HZY
DNA 9007-49-2
Thymine QR26YLT7LT

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

4987-5000

Auteurs

Daniil A Fedotov (DA)

DTU Chemistry, Technical University of Denmark, 2800 Kongens Lyngby, Denmark. soco@kemi.dtu.dk.

Alexander C Paul (AC)

Department of Chemistry, NTNU - Norwegian University of Science and Technology, N-7491 Trondheim, Norway.

Henrik Koch (H)

Department of Chemistry, NTNU - Norwegian University of Science and Technology, N-7491 Trondheim, Norway.
Scuola Normale Superiore, Piazza dei Cavalieri, 7, I-56126, Pisa, Italy. henrik.koch@sns.it.

Fabrizio Santoro (F)

Istituto di Chimica dei Composti Organometallici (ICCOM-CNR), Area della Ricerca del CNR, I-56124 Pisa, Italy. fabrizio.santoro@iccom.cnr.it.

Sonia Coriani (S)

DTU Chemistry, Technical University of Denmark, 2800 Kongens Lyngby, Denmark. soco@kemi.dtu.dk.
Department of Chemistry, NTNU - Norwegian University of Science and Technology, N-7491 Trondheim, Norway.

Roberto Improta (R)

Istituto di Biostrutture e Bioimmagini-CNR, I-80134 Napoli, Italy. robimp@unina.it.

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Classifications MeSH