Deleterious variants in CRLS1 lead to cardiolipin deficiency and cause an autosomal recessive multi-system mitochondrial disease.


Journal

Human molecular genetics
ISSN: 1460-2083
Titre abrégé: Hum Mol Genet
Pays: England
ID NLM: 9208958

Informations de publication

Date de publication:
28 10 2022
Historique:
received: 25 10 2021
revised: 01 02 2022
accepted: 06 02 2022
pubmed: 12 2 2022
medline: 2 11 2022
entrez: 11 2 2022
Statut: ppublish

Résumé

Mitochondrial diseases are a group of inherited diseases with highly varied and complex clinical presentations. Here, we report four individuals, including two siblings, affected by a progressive mitochondrial encephalopathy with biallelic variants in the cardiolipin biosynthesis gene CRLS1. Three affected individuals had a similar infantile presentation comprising progressive encephalopathy, bull's eye maculopathy, auditory neuropathy, diabetes insipidus, autonomic instability, cardiac defects and early death. The fourth affected individual presented with chronic encephalopathy with neurodevelopmental regression, congenital nystagmus with decreased vision, sensorineural hearing loss, failure to thrive and acquired microcephaly. Using patient-derived fibroblasts, we characterized cardiolipin synthase 1 (CRLS1) dysfunction that impaired mitochondrial morphology and biogenesis, providing functional evidence that the CRLS1 variants cause mitochondrial disease. Lipid profiling in fibroblasts from two patients further confirmed the functional defect demonstrating reduced cardiolipin levels, altered acyl-chain composition and significantly increased levels of phosphatidylglycerol, the substrate of CRLS1. Proteomic profiling of patient cells and mouse Crls1 knockout cell lines identified both endoplasmic reticular and mitochondrial stress responses, and key features that distinguish between varying degrees of cardiolipin insufficiency. These findings support that deleterious variants in CRLS1 cause an autosomal recessive mitochondrial disease, presenting as a severe encephalopathy with multi-systemic involvement. Furthermore, we identify key signatures in cardiolipin and proteome profiles across various degrees of cardiolipin loss, facilitating the use of omics technologies to guide future diagnosis of mitochondrial diseases.

Identifiants

pubmed: 35147173
pii: 6526744
doi: 10.1093/hmg/ddac040
pmc: PMC9616573
doi:

Substances chimiques

Cardiolipins 0
CRLS1 protein, human 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

3597-3612

Commentaires et corrections

Type : ErratumIn

Informations de copyright

© The Author(s) 2022. Published by Oxford University Press.

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Auteurs

Richard G Lee (RG)

Telethon Kids Institute, Northern Entrance, Perth Children's Hospital, Nedlands, WA 6009, Australia.
Harry Perkins Institute of Medical Research, QEII Medical Centre, Nedlands, WA 6009, Australia.
ARC Centre of Excellence in Synthetic Biology, Centre for Medical Research, The University of Western Australia, QEII Medical Centre, Nedlands, WA 6009, Australia.

Shanti Balasubramaniam (S)

Genetic Metabolic Disorders Service, The Children's Hospital at Westmead, Sydney, NSW 2145, Australia.
Discipline of Genomic Medicine, Sydney Medical School, University of Sydney, Sydney, NSW 2006, Australia.

Maike Stentenbach (M)

Telethon Kids Institute, Northern Entrance, Perth Children's Hospital, Nedlands, WA 6009, Australia.
Harry Perkins Institute of Medical Research, QEII Medical Centre, Nedlands, WA 6009, Australia.
ARC Centre of Excellence in Synthetic Biology, Centre for Medical Research, The University of Western Australia, QEII Medical Centre, Nedlands, WA 6009, Australia.

Tom Kralj (T)

School of Chemistry, The University of Melbourne, Parkville, VIC 3010, Australia.

Tim McCubbin (T)

Australian Institute for Bioengineering and Nanotechnology, and Queensland Node of Metabolomics Australia,The University of Queensland, St Lucia, QLD 4072, Australia.

Benjamin Padman (B)

Centre for Microscopy, Characterisation and Analysis, The University of WA, Perth, WA 6009, Australia.

Janine Smith (J)

Discipline of Genomic Medicine, Sydney Medical School, University of Sydney, Sydney, NSW 2006, Australia.
Department of Clinical Genetics, The Children's Hospital at Westmead, Sydney, NSW 2145, Australia.

Lisa G Riley (LG)

Rare Diseases Functional Genomics, Kids Research, The Children's Hospital at Westmead and Children's Medical Research Institute, Sydney, NSW 2145, Australia.
Discipline of Child and Adolescent Health, University of Sydney, Sydney, NSW 2145, Australia.

Archana Priyadarshi (A)

Discipline of Child and Adolescent Health, University of Sydney, Sydney, NSW 2145, Australia.
Neonatal Intensive Care Unit, Westmead Hospital, Sydney, NSW 2145, Australia.

Liuyu Peng (L)

School of Chemistry, The University of Melbourne, Parkville, VIC 3010, Australia.

Madison R Nuske (MR)

School of Chemistry, The University of Melbourne, Parkville, VIC 3010, Australia.

Richard Webster (R)

Department of Paediatrics, University of Melbourne, VIC 3052, Australia.

Ken Peacock (K)

Kids Neuroscience Centre, The Children's Hospital at Westmead, Sydney, NSW 2145, Australia.
General Paediatric Medicine, The Children's Hospital at Westmead, Sydney, NSW 2145, Australia.

Philip Roberts (P)

Heart Centre for Children, The Children's Hospital at Westmead, Sydney, NSW 2145, Australia.

Zornitza Stark (Z)

University of Melbourne, Parkville, VIC 3052, Australia.
Australian Genomics, Melbourne, VIC 3052, Australia.
Victorian Clinical Genetics Services, Melbourne, VIC 3052, Australia.

Gabrielle Lemire (G)

Children's Hospital of Eastern Ontario Research Institute, University of Ottawa, Ottawa, ON K1H 8L1, Canada.

Yoko A Ito (YA)

Children's Hospital of Eastern Ontario Research Institute, University of Ottawa, Ottawa, ON K1H 8L1, Canada.

Kym M Boycott (KM)

Children's Hospital of Eastern Ontario Research Institute, University of Ottawa, Ottawa, ON K1H 8L1, Canada.

Michael T Geraghty (MT)

Metabolics and Newborn Screening, Pediatrics, Children's Hospital of Eastern Ontario, University of Ottawa, Ottawa, ON K1H 8L1, Canada.

Jan Bert van Klinken (JB)

Department of Clinical Chemistry, Laboratory Genetic Metabolic Diseases, University of Amsterdam, Amsterdam Gastroenterology Endocrinology Metabolism, 1105 AZ Amsterdam, The Netherlands.
Core Facility Metabolomics, Amsterdam UMC, University of Amsterdam, 1105 AZ Amsterdam, The Netherlands.
Department of Human Genetics, Leiden University Medical Center, 2333ZA Leiden, The Netherlands.

Sacha Ferdinandusse (S)

Department of Clinical Chemistry, Laboratory Genetic Metabolic Diseases, University of Amsterdam, Amsterdam Gastroenterology Endocrinology Metabolism, 1105 AZ Amsterdam, The Netherlands.

Ying Zhou (Y)

NSW Health Pathology, Randwick, NSW 2145, Australia.

Rebecca Walsh (R)

NSW Health Pathology, Randwick, NSW 2145, Australia.

Esteban Marcellin (E)

Australian Institute for Bioengineering and Nanotechnology, and Queensland Node of Metabolomics Australia,The University of Queensland, St Lucia, QLD 4072, Australia.

David R Thorburn (DR)

University of Melbourne, Parkville, VIC 3052, Australia.
Victorian Clinical Genetics Services, Melbourne, VIC 3052, Australia.
Murdoch Children's Research Institute, Melbourne, VIC 3052, Australia.

Tony Rosciolli (T)

NSW Health Pathology, Randwick, NSW 2145, Australia.
Neuroscience Research Australia (NeuRA), University of New South Wales, Sydney, NSW 2145, Australia.

Janice Fletcher (J)

NSW Health Pathology, Randwick, NSW 2145, Australia.

Oliver Rackham (O)

Telethon Kids Institute, Northern Entrance, Perth Children's Hospital, Nedlands, WA 6009, Australia.
Harry Perkins Institute of Medical Research, QEII Medical Centre, Nedlands, WA 6009, Australia.
ARC Centre of Excellence in Synthetic Biology, Centre for Medical Research, The University of Western Australia, QEII Medical Centre, Nedlands, WA 6009, Australia.
Curtin Medical School, Curtin University, Bentley, WA 6102, Australia.
Curtin Health Innovation Research Institute, Curtin University, Bentley, WA 6102, Australia.

Frédéric M Vaz (FM)

Department of Clinical Chemistry, Laboratory Genetic Metabolic Diseases, University of Amsterdam, Amsterdam Gastroenterology Endocrinology Metabolism, 1105 AZ Amsterdam, The Netherlands.
Core Facility Metabolomics, Amsterdam UMC, University of Amsterdam, 1105 AZ Amsterdam, The Netherlands.
Department of Pediatrics, Emma Children's Hospital, Amsterdam UMC, University of Amsterdam, 1105 AZ Amsterdam, The Netherlands.

Gavin E Reid (GE)

School of Chemistry, The University of Melbourne, Parkville, VIC 3010, Australia.
Department of Biochemistry and Pharmacology, The University of Melbourne, Parkville, VIC 3010, Australia.
Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Parkville, VIC 3010, Australia.

Aleksandra Filipovska (A)

Telethon Kids Institute, Northern Entrance, Perth Children's Hospital, Nedlands, WA 6009, Australia.
Harry Perkins Institute of Medical Research, QEII Medical Centre, Nedlands, WA 6009, Australia.
ARC Centre of Excellence in Synthetic Biology, Centre for Medical Research, The University of Western Australia, QEII Medical Centre, Nedlands, WA 6009, Australia.

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