CRISPR Approaches for the Diagnosis of Human Diseases.
CRISPR
Cas13
diagnostic
human diseases
Journal
International journal of molecular sciences
ISSN: 1422-0067
Titre abrégé: Int J Mol Sci
Pays: Switzerland
ID NLM: 101092791
Informations de publication
Date de publication:
03 Feb 2022
03 Feb 2022
Historique:
received:
31
12
2021
revised:
30
01
2022
accepted:
01
02
2022
entrez:
15
2
2022
pubmed:
16
2
2022
medline:
22
2
2022
Statut:
epublish
Résumé
CRISPR/Cas is a prokaryotic self-defense system, widely known for its use as a gene-editing tool. Because of their high specificity to detect DNA and RNA sequences, different CRISPR systems have been adapted for nucleic acid detection. CRISPR detection technologies differ highly among them, since they are based on four of the six major subtypes of CRISPR systems. In just 5 years, the CRISPR diagnostic field has rapidly expanded, growing from a set of specific molecular biology discoveries to multiple FDA-authorized COVID-19 tests and the establishment of several companies. CRISPR-based detection methods are coupled with pre-existing preamplification and readout technologies, achieving sensitivity and reproducibility comparable to the current gold standard nucleic acid detection methods. Moreover, they are very versatile, can be easily implemented to detect emerging pathogens and new clinically relevant mutations, and offer multiplexing capability. The advantages of the CRISPR-based diagnostic approaches are a short sample-to-answer time and no requirement of laboratory settings; they are also much more affordable than current nucleic acid detection procedures. In this review, we summarize the applications and development trends of the CRISPR/Cas13 system in the identification of particular pathogens and mutations and discuss the challenges and future prospects of CRISPR-based diagnostic platforms in biomedicine.
Identifiants
pubmed: 35163678
pii: ijms23031757
doi: 10.3390/ijms23031757
pmc: PMC8836363
pii:
doi:
Substances chimiques
DNA
9007-49-2
Types de publication
Journal Article
Review
Langues
eng
Sous-ensembles de citation
IM
Références
Nat Biotechnol. 2020 Jul;38(7):870-874
pubmed: 32300245
Anal Chem. 2020 Mar 3;92(5):4029-4037
pubmed: 32031369
Mol Cell. 2018 Nov 1;72(3):404-412
pubmed: 30388409
Elife. 2021 Jun 09;10:
pubmed: 34106048
Sci Rep. 2019 Dec 23;9(1):19702
pubmed: 31873150
RNA. 2020 Jul;26(7):771-783
pubmed: 32358057
Cell. 2016 Dec 15;167(7):1814-1828.e12
pubmed: 27984729
Biosens Bioelectron. 2021 Apr 15;178:113027
pubmed: 33529861
Commun Biol. 2021 Apr 19;4(1):476
pubmed: 33875803
Cell Res. 2018 Apr;28(4):491-493
pubmed: 29531313
ACS Infect Dis. 2018 Sep 14;4(9):1278-1282
pubmed: 30113801
Cell. 2018 Sep 20;175(1):212-223.e17
pubmed: 30241607
Mol Microbiol. 2002 Mar;43(6):1565-75
pubmed: 11952905
Methods. 2021 Apr 9;:
pubmed: 33839288
Trends Biotechnol. 2019 Jul;37(7):730-743
pubmed: 30654914
Mol Cell. 2017 Apr 20;66(2):221-233.e4
pubmed: 28431230
Cell Discov. 2018 Apr 24;4:20
pubmed: 29707234
Proc Natl Acad Sci U S A. 2002 May 28;99(11):7536-41
pubmed: 12032318
Nat Methods. 2017 Mar;14(3):297-301
pubmed: 28099430
Cancer Discov. 2020 Feb;10(2):270-287
pubmed: 31744829
Mol Cell. 2017 Oct 5;68(1):15-25
pubmed: 28985502
Nature. 2020 Jun;582(7811):277-282
pubmed: 32349121
Clin Biochem. 2021 Mar;89:1-13
pubmed: 33428900
Cell. 2015 Oct 22;163(3):759-71
pubmed: 26422227
Int J Mol Sci. 2021 Apr 26;22(9):
pubmed: 33926102
CRISPR J. 2018 Oct;1(5):325-336
pubmed: 31021272
Nucleic Acids Res. 2019 Aug 22;47(14):e83
pubmed: 31114866
Talanta. 2021 Mar 1;224:121878
pubmed: 33379087
ACS Synth Biol. 2019 Oct 18;8(10):2228-2237
pubmed: 31532637
Front Mol Biosci. 2020 Dec 23;7:582499
pubmed: 33425987
ACS Synth Biol. 2017 Feb 17;6(2):211-216
pubmed: 27718551
Science. 2016 Aug 5;353(6299):aaf5573
pubmed: 27256883
Cell. 2016 May 19;165(5):1255-1266
pubmed: 27160350
Science. 2018 Nov 16;362(6416):839-842
pubmed: 30337455
Biophys J. 2021 Apr 6;120(7):1198-1209
pubmed: 33617832
Science. 2018 Apr 27;360(6387):439-444
pubmed: 29449508
Sci Rep. 2020 Jul 14;10(1):11610
pubmed: 32665590
Mol Microbiol. 1993 Aug;9(3):613-21
pubmed: 8412707
Biosens Bioelectron. 2021 Apr 1;177:112887
pubmed: 33493854
ACS Sens. 2019 Apr 26;4(4):1048-1054
pubmed: 30860365
Biotechnol Bioeng. 2020 Jul;117(7):2279-2294
pubmed: 32175589
Transgenic Res. 2021 Jun;30(3):221-238
pubmed: 33830423
Nat Protoc. 2019 Oct;14(10):2986-3012
pubmed: 31548639
Nat Chem Biol. 2021 Sep;17(9):982-988
pubmed: 34354262
Mol Cell. 2018 Apr 19;70(2):327-339.e5
pubmed: 29551514
Mol Cell. 2017 Feb 16;65(4):618-630.e7
pubmed: 28065598
Proc Natl Acad Sci U S A. 2020 Oct 13;117(41):25722-25731
pubmed: 32958655
J Clin Microbiol. 2009 Sep;47(9):2812-7
pubmed: 19571025
Anal Chem. 2019 Apr 16;91(8):5278-5285
pubmed: 30873832
Science. 2007 Mar 23;315(5819):1709-12
pubmed: 17379808
ACS Nano. 2020 Feb 25;14(2):2497-2508
pubmed: 32045522
Cell. 2017 Aug 10;170(4):714-726.e10
pubmed: 28757251
Nat Commun. 2018 Nov 27;9(1):5012
pubmed: 30479331
Cell Rep. 2018 Jul 24;24(4):1025-1036
pubmed: 30044970
Cell. 2021 Jan 21;184(2):323-333.e9
pubmed: 33306959
Int J Mol Sci. 2021 Mar 24;22(7):
pubmed: 33805113
Nat Commun. 2020 Jan 14;11(1):267
pubmed: 31937772
Front Microbiol. 2019 Sep 13;10:2160
pubmed: 31572350
Nature. 2016 Oct 13;538(7624):270-273
pubmed: 27669025
Science. 2021 May 28;372(6545):941-948
pubmed: 33906967
Anal Chem. 2021 Sep 28;93(38):12881-12888
pubmed: 34521192
Anal Chem. 2018 Feb 6;90(3):2193-2200
pubmed: 29260561
PLoS One. 2019 Dec 18;14(12):e0220091
pubmed: 31851676
Infection. 2021 Apr;49(2):199-213
pubmed: 32886331
Nature. 2017 Oct 12;550(7675):280-284
pubmed: 28976959
Nature. 2017 Feb 9;542(7640):237-241
pubmed: 28005056
Molecules. 2015 Apr 07;20(4):6048-59
pubmed: 25853320
Nat Commun. 2020 Oct 8;11(1):5060
pubmed: 33033246
Anal Chem. 2021 Feb 2;93(4):2038-2044
pubmed: 33411517
Chem Commun (Camb). 2021 Jan 7;57(2):247-250
pubmed: 33306075
Science. 2017 Nov 24;358(6366):1019-1027
pubmed: 29070703
Nat Rev Microbiol. 2020 Feb;18(2):67-83
pubmed: 31857715
Anal Chem. 2020 Jan 21;92(2):2176-2185
pubmed: 31875674
Science. 2014 Mar 14;343(6176):1247997
pubmed: 24505130
N Engl J Med. 2020 Oct 8;383(15):1492-1494
pubmed: 32937062
Adv Sci (Weinh). 2020 May 27;7(13):1903661
pubmed: 32670752
J Mol Evol. 2005 Feb;60(2):174-82
pubmed: 15791728
Nat Biomed Eng. 2020 Dec;4(12):1140-1149
pubmed: 32848209
Anal Chem. 2012 Jan 3;84(1):224-31
pubmed: 22103863
Nature. 2018 May;557(7704):168-169
pubmed: 29730672
Nat Biomed Eng. 2020 Jun;4(6):601-609
pubmed: 32284553
Science. 2012 Aug 17;337(6096):816-21
pubmed: 22745249
Nat Rev Microbiol. 2015 Nov;13(11):722-36
pubmed: 26411297
Clin Chem. 2019 Apr;65(4):591-592
pubmed: 30755401
Science. 2017 Apr 28;356(6336):438-442
pubmed: 28408723
Mol Cell. 2021 Mar 4;81(5):1100-1115.e5
pubmed: 33472057
Genome Biol. 2019 Dec 2;20(1):263
pubmed: 31791381
Int J Mol Sci. 2020 Feb 07;21(3):
pubmed: 32046217
Nat Commun. 2020 Nov 20;11(1):5921
pubmed: 33219225
Mol Cell. 2015 Nov 5;60(3):385-97
pubmed: 26593719
Genome Biol. 2019 Jul 1;20(1):132
pubmed: 31262344
Cell. 2018 Apr 19;173(3):665-676.e14
pubmed: 29551272
Cell. 2009 Nov 25;139(5):945-56
pubmed: 19945378
Clin Infect Dis. 2000 Sep;31(3):739-51
pubmed: 11017824
Adv Mater. 2019 Dec;31(51):e1905311
pubmed: 31663165
J Bacteriol. 1987 Dec;169(12):5429-33
pubmed: 3316184
Nat Rev Microbiol. 2011 Jun;9(6):467-77
pubmed: 21552286
Science. 2018 Apr 27;360(6387):444-448
pubmed: 29700266
Theranostics. 2020 Aug 13;10(22):10262-10273
pubmed: 32929347
ACS Nano. 2021 Jan 26;15(1):1167-1178
pubmed: 33498106
Nat Commun. 2019 Jun 11;10(1):2544
pubmed: 31186424
Chem Sci. 2020 Jun 19;11(28):7362-7368
pubmed: 33133487