Influence of Physical-Chemical Soil Parameters on Microbiota Composition and Diversity in a Deep Hyperarid Core of the Atacama Desert.
Atacama Desert
deep soil
hyperarid soil
microbiota
physicochemical properties
Journal
Frontiers in microbiology
ISSN: 1664-302X
Titre abrégé: Front Microbiol
Pays: Switzerland
ID NLM: 101548977
Informations de publication
Date de publication:
2021
2021
Historique:
received:
14
10
2021
accepted:
24
12
2021
entrez:
24
2
2022
pubmed:
25
2
2022
medline:
25
2
2022
Statut:
epublish
Résumé
The extreme environmental conditions and lack of water on the soil surface in hyperarid deserts hamper microbial life, allowing only highly specialized microbial communities to the establish colonies and survive. Until now, the microbial communities that inhabit or have inhabited soils of hyperarid environments at greater depths have been poorly studied. We analyzed for the first time the variation in microbial communities down to a depth of 3.4 m in one of the driest places of the world, the hyperarid Yungay region in the Atacama Desert, and we related it to changes in soil physico-chemical characteristics. We found that the moisture content changed from 2 to 11% with depth and enabled the differentiation of three depth intervals: (i) surface zone A (0-60 cm), (ii) intermediate zone B (60-220 cm), and (iii) deep zone C (220-340 cm). Each zone showed further specific physicochemical and mineralogical features. Likewise, some bacterial phyla were unique in each zone, i.e., members of the taxa
Identifiants
pubmed: 35197940
doi: 10.3389/fmicb.2021.794743
pmc: PMC8859261
doi:
Types de publication
Journal Article
Langues
eng
Pagination
794743Informations de copyright
Copyright © 2022 Fuentes, Choque, Gómez, Alarcón, Castro-Nallar, Arenas, Contreras, Mörchen, Amelung, Knief, Moradi, Klumpp, Saavedra, Prietzel, Klysubun, Remonsellez and Bol.
Déclaration de conflit d'intérêts
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Références
Proc Natl Acad Sci U S A. 2018 Oct 16;115(42):10702-10707
pubmed: 30275328
Antonie Van Leeuwenhoek. 2013 Jun;103(6):1173-9
pubmed: 23564162
Microbiome. 2013 Nov 20;1(1):28
pubmed: 24451153
ISME J. 2012 Aug;6(8):1621-4
pubmed: 22402401
Extremophiles. 2012 May;16(3):553-66
pubmed: 22527047
Sci Rep. 2020 Nov 5;10(1):19183
pubmed: 33154541
Appl Environ Microbiol. 2007 Aug;73(16):5261-7
pubmed: 17586664
Nucleic Acids Res. 2013 Jan;41(Database issue):D590-6
pubmed: 23193283
Front Microbiol. 2019 Feb 28;10:69
pubmed: 30873126
Environ Microbiol Rep. 2015 Jun;7(3):388-94
pubmed: 25545388
FEMS Microbiol Ecol. 2020 May 1;96(5):
pubmed: 32239205
Microb Ecol. 2013 Nov;66(4):850-60
pubmed: 23963222
mSystems. 2017 May 30;2(3):
pubmed: 28593197
Microorganisms. 2021 May 12;9(5):
pubmed: 34065975
Microb Ecol. 2006 Oct;52(3):389-98
pubmed: 16865610
Environ Sci Technol. 2015 Sep 1;49(17):10521-8
pubmed: 26270570
Nat Methods. 2016 Jul;13(7):581-3
pubmed: 27214047
Front Microbiol. 2018 Sep 20;9:2228
pubmed: 30294311
Front Microbiol. 2016 Aug 22;7:1284
pubmed: 27597845
FEBS Lett. 2012 Aug 31;586(18):2939-45
pubmed: 22819826
PLoS One. 2013 Apr 22;8(4):e61217
pubmed: 23630581
Astrobiology. 2006 Jun;6(3):415-22
pubmed: 16805697
Microbiome. 2018 Dec 17;6(1):226
pubmed: 30558668
Sci Rep. 2018 Sep 13;8(1):13788
pubmed: 30214005
FEMS Microbiol Ecol. 2003 Jul 1;45(2):115-25
pubmed: 19719622
mBio. 2020 Oct 27;11(5):
pubmed: 33109755
Sci Rep. 2018 Nov 12;8(1):16706
pubmed: 30420604
Front Microbiol. 2021 Mar 10;12:636405
pubmed: 33790877
Int J Syst Evol Microbiol. 2012 Sep;62(Pt 9):2127-2132
pubmed: 22039006
Science. 2003 Nov 7;302(5647):1018-21
pubmed: 14605363
Int J Syst Evol Microbiol. 2018 Nov;68(11):3593-3599
pubmed: 30285911
Trends Microbiol. 2019 Feb;27(2):105-117
pubmed: 30497919
Front Microbiol. 2015 Oct 13;6:1121
pubmed: 26528268
Proc Natl Acad Sci U S A. 2018 Mar 13;115(11):2670-2675
pubmed: 29483268
Nat Methods. 2010 May;7(5):335-6
pubmed: 20383131
J Synchrotron Radiat. 2016 Mar;23(2):532-44
pubmed: 26917141
ISME J. 2016 Oct;10(10):2447-58
pubmed: 27022994
Front Microbiol. 2017 Jul 28;8:1435
pubmed: 28804480
Microb Ecol. 2010 Oct;60(3):539-50
pubmed: 20386898
Sci Rep. 2018 Sep 17;8(1):13952
pubmed: 30224725