A comparison of machine learning methods for predicting recurrence and death after curative-intent radiotherapy for non-small cell lung cancer: Development and validation of multivariable clinical prediction models.


Journal

EBioMedicine
ISSN: 2352-3964
Titre abrégé: EBioMedicine
Pays: Netherlands
ID NLM: 101647039

Informations de publication

Date de publication:
Mar 2022
Historique:
received: 04 10 2021
revised: 16 02 2022
accepted: 16 02 2022
pubmed: 7 3 2022
medline: 5 4 2022
entrez: 6 3 2022
Statut: ppublish

Résumé

Surveillance is universally recommended for non-small cell lung cancer (NSCLC) patients treated with curative-intent radiotherapy. High-quality evidence to inform optimal surveillance strategies is lacking. Machine learning demonstrates promise in accurate outcome prediction for a variety of health conditions. The purpose of this study was to utilise readily available patient, tumour, and treatment data to develop, validate and externally test machine learning models for predicting recurrence, recurrence-free survival (RFS) and overall survival (OS) at 2 years from treatment. A retrospective, multicentre study of patients receiving curative-intent radiotherapy for NSCLC was undertaken. A total of 657 patients from 5 hospitals were eligible for inclusion. Data pre-processing derived 34 features for predictive modelling. Combinations of 8 feature reduction methods and 10 machine learning classification algorithms were compared, producing risk-stratification models for predicting recurrence, RFS and OS. Models were compared with 10-fold cross validation and an external test set and benchmarked against TNM-stage and performance status. Youden Index was derived from validation set ROC curves to distinguish high and low risk groups and Kaplan-Meier analyses performed. Median follow-up time was 852 days. Parameters were well matched across training-validation and external test sets: Mean age was 73 and 71 respectively, and recurrence, RFS and OS rates at 2 years were 43% vs 34%, 54% vs 47% and 54% vs 47% respectively. The respective validation and test set AUCs were as follows: 1) RFS: 0·682 (0·575-0·788) and 0·681 (0·597-0·766), 2) Recurrence: 0·687 (0·582-0·793) and 0·722 (0·635-0·81), and 3) OS: 0·759 (0·663-0·855) and 0·717 (0·634-0·8). Our models were superior to TNM stage and performance status in predicting recurrence and OS. This robust and ready to use machine learning method, validated and externally tested, sets the stage for future clinical trials entailing quantitative personalised risk-stratification and surveillance following curative-intent radiotherapy for NSCLC. A full list of funding bodies that contributed to this study can be found in the Acknowledgements section.

Sections du résumé

BACKGROUND BACKGROUND
Surveillance is universally recommended for non-small cell lung cancer (NSCLC) patients treated with curative-intent radiotherapy. High-quality evidence to inform optimal surveillance strategies is lacking. Machine learning demonstrates promise in accurate outcome prediction for a variety of health conditions. The purpose of this study was to utilise readily available patient, tumour, and treatment data to develop, validate and externally test machine learning models for predicting recurrence, recurrence-free survival (RFS) and overall survival (OS) at 2 years from treatment.
METHODS METHODS
A retrospective, multicentre study of patients receiving curative-intent radiotherapy for NSCLC was undertaken. A total of 657 patients from 5 hospitals were eligible for inclusion. Data pre-processing derived 34 features for predictive modelling. Combinations of 8 feature reduction methods and 10 machine learning classification algorithms were compared, producing risk-stratification models for predicting recurrence, RFS and OS. Models were compared with 10-fold cross validation and an external test set and benchmarked against TNM-stage and performance status. Youden Index was derived from validation set ROC curves to distinguish high and low risk groups and Kaplan-Meier analyses performed.
FINDINGS RESULTS
Median follow-up time was 852 days. Parameters were well matched across training-validation and external test sets: Mean age was 73 and 71 respectively, and recurrence, RFS and OS rates at 2 years were 43% vs 34%, 54% vs 47% and 54% vs 47% respectively. The respective validation and test set AUCs were as follows: 1) RFS: 0·682 (0·575-0·788) and 0·681 (0·597-0·766), 2) Recurrence: 0·687 (0·582-0·793) and 0·722 (0·635-0·81), and 3) OS: 0·759 (0·663-0·855) and 0·717 (0·634-0·8). Our models were superior to TNM stage and performance status in predicting recurrence and OS.
INTERPRETATION CONCLUSIONS
This robust and ready to use machine learning method, validated and externally tested, sets the stage for future clinical trials entailing quantitative personalised risk-stratification and surveillance following curative-intent radiotherapy for NSCLC.
FUNDING BACKGROUND
A full list of funding bodies that contributed to this study can be found in the Acknowledgements section.

Identifiants

pubmed: 35248997
pii: S2352-3964(22)00095-0
doi: 10.1016/j.ebiom.2022.103911
pmc: PMC8897583
pii:
doi:

Types de publication

Journal Article Multicenter Study

Langues

eng

Sous-ensembles de citation

IM

Pagination

103911

Informations de copyright

Copyright © 2022 The Authors. Published by Elsevier B.V. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of interests Richard Lee receives funding from Cancer Research UK, Innovate UK (co-funded with Roche and Optellum), NIHR and RM Partners outside of this work. He is Joint Clinical Lead for the NHS England Lung Health Checks programme and a National Specialty Lead for the NIHR, and receives funding directly to his institution, outside of this work for these roles. He receives consulting fees from the Royal Marsden Private Care, and honoraria from Cancer Research UK as a member of the Early Diagnosis grants peer review panel, not related to this work.

Auteurs

Sumeet Hindocha (S)

Lung Unit, The Royal Marsden NHS Foundation Trust, Fulham Road, London SW36JJ, UK; AI for Healthcare Centre for Doctoral Training, Imperial College London, Exhibition Road, London SW7 2BX, UK; Department of Clinical Oncology, Institute of Cancer Research NIHR Biomedical Research Centre, London, UK; Cancer Imaging Centre, Department of Surgery and Cancer, Imperial College London, Du Cane Road, London W12 0NN, UK; Early Diagnosis and Detection Centre, National Institute for Health Research (NIHR) Biomedical Research Centre at The Royal Marsden NHS Foundation Trust and the Institute of Cancer Research, London.

Thomas G Charlton (TG)

Guy's Cancer Centre, Guy's and St Thomas' NHS Foundation Trust, Great Maze Pond, London SE19RT UK.

Kristofer Linton-Reid (K)

Cancer Imaging Centre, Department of Surgery and Cancer, Imperial College London, Du Cane Road, London W12 0NN, UK.

Benjamin Hunter (B)

Lung Unit, The Royal Marsden NHS Foundation Trust, Fulham Road, London SW36JJ, UK; Department of Clinical Oncology, Institute of Cancer Research NIHR Biomedical Research Centre, London, UK; Cancer Imaging Centre, Department of Surgery and Cancer, Imperial College London, Du Cane Road, London W12 0NN, UK; Early Diagnosis and Detection Centre, National Institute for Health Research (NIHR) Biomedical Research Centre at The Royal Marsden NHS Foundation Trust and the Institute of Cancer Research, London.

Charleen Chan (C)

Department of Clinical Oncology, Institute of Cancer Research NIHR Biomedical Research Centre, London, UK.

Merina Ahmed (M)

Lung Unit, The Royal Marsden NHS Foundation Trust, Downs Road, Sutton SM25PT, UK.

Emily J Robinson (EJ)

Clinical Trials Unit, Royal Marsden NHS Foundation Trust, Downs Road, Sutton SM25PT, UK.

Matthew Orton (M)

Artificial Intelligence Imaging Hub, Royal Marsden NHS Foundation Trust, Downs Road, Sutton SM25PT, UK.

Shahreen Ahmad (S)

Guy's Cancer Centre, Guy's and St Thomas' NHS Foundation Trust, Great Maze Pond, London SE19RT UK.

Fiona McDonald (F)

Lung Unit, The Royal Marsden NHS Foundation Trust, Fulham Road, London SW36JJ, UK; Department of Clinical Oncology, Institute of Cancer Research NIHR Biomedical Research Centre, London, UK.

Imogen Locke (I)

Lung Unit, The Royal Marsden NHS Foundation Trust, Downs Road, Sutton SM25PT, UK.

Danielle Power (D)

Department of Clinical Oncology, Charing Cross Hospital, Fulham Palace Road, London W6 8RF, UK.

Matthew Blackledge (M)

Radiotherapy and Imaging, Institute of Cancer Research, 123 Old Brompton Road, London SW7 3RP, UK.

Richard W Lee (RW)

Lung Unit, The Royal Marsden NHS Foundation Trust, Fulham Road, London SW36JJ, UK; Early Diagnosis and Detection Centre, National Institute for Health Research (NIHR) Biomedical Research Centre at The Royal Marsden NHS Foundation Trust and the Institute of Cancer Research, London; National Heart and Lung Institute, Imperial College, London, UK. Electronic address: Richard.Lee@rmh.nhs.uk.

Eric O Aboagye (EO)

Department of Clinical Oncology, Institute of Cancer Research NIHR Biomedical Research Centre, London, UK. Electronic address: eric.aboagye@imperial.ac.uk.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH