An Epigenetic Alphabet of Crop Adaptation to Climate Change.
abiotic stresses
adaptation
climate change
environmental stresses
epigenetic code
epigenetics
Journal
Frontiers in genetics
ISSN: 1664-8021
Titre abrégé: Front Genet
Pays: Switzerland
ID NLM: 101560621
Informations de publication
Date de publication:
2022
2022
Historique:
received:
19
11
2021
accepted:
28
01
2022
entrez:
7
3
2022
pubmed:
8
3
2022
medline:
8
3
2022
Statut:
epublish
Résumé
Crop adaptation to climate change is in a part attributed to epigenetic mechanisms which are related to response to abiotic and biotic stresses. Although recent studies increased our knowledge on the nature of these mechanisms, epigenetics remains under-investigated and still poorly understood in many, especially non-model, plants, Epigenetic modifications are traditionally divided into two main groups, DNA methylation and histone modifications that lead to chromatin remodeling and the regulation of genome functioning. In this review, we outline the most recent and interesting findings on crop epigenetic responses to the environmental cues that are most relevant to climate change. In addition, we discuss a speculative point of view, in which we try to decipher the "epigenetic alphabet" that underlies crop adaptation mechanisms to climate change. The understanding of these mechanisms will pave the way to new strategies to design and implement the next generation of cultivars with a broad range of tolerance/resistance to stresses as well as balanced agronomic traits, with a limited loss of (epi)genetic variability.
Identifiants
pubmed: 35251130
doi: 10.3389/fgene.2022.818727
pii: 818727
pmc: PMC8888914
doi:
Types de publication
Journal Article
Review
Langues
eng
Pagination
818727Informations de copyright
Copyright © 2022 Guarino, Cicatelli, Castiglione, Agius, Orhun, Fragkostefanakis, Leclercq, Dobránszki, Kaiserli, Lieberman-Lazarovich, Sõmera, Sarmiento, Vettori, Paffetti, Poma, Moschou, Gašparović, Yousefi, Vergata, Berger, Gallusci, Miladinović and Martinelli.
Déclaration de conflit d'intérêts
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Références
Proc Natl Acad Sci U S A. 2015 Jul 7;112(27):8487-92
pubmed: 26100864
Physiol Plant. 2009 Jun;136(2):223-36
pubmed: 19453503
Ann N Y Acad Sci. 2002 Dec;981:7-49
pubmed: 12547672
Nature. 2018 Aug;560(7716):20-22
pubmed: 30061648
Genome Biol. 2009;10(6):R62
pubmed: 19508735
Plant Cell Physiol. 2014 Feb;55(2):455-66
pubmed: 24319075
Nature. 2011 Apr 7;472(7341):115-9
pubmed: 21399627
Cold Spring Harb Perspect Biol. 2015 Sep 01;7(9):a025064
pubmed: 26330523
Plant Signal Behav. 2018;13(8):e1460048
pubmed: 29621424
Sci Rep. 2017 Jan 04;7:39843
pubmed: 28051176
Plant Mol Biol. 2010 Apr;72(6):585-95
pubmed: 20054610
Annu Rev Plant Biol. 2019 Apr 29;70:489-525
pubmed: 30848930
Front Plant Sci. 2019 Jun 25;10:800
pubmed: 31293607
Trends Plant Sci. 2017 Jul;22(7):610-623
pubmed: 28587758
Physiol Mol Biol Plants. 2016 Jan;22(1):107-14
pubmed: 27186024
Proc Biol Sci. 2016 Sep 14;283(1838):
pubmed: 27629032
Mol Plant. 2018 Dec 3;11(12):1492-1508
pubmed: 30448535
New Phytol. 2018 Mar;217(4):1582-1597
pubmed: 29250818
PLoS Biol. 2007 May;5(5):e129
pubmed: 17439305
Nat Rev Mol Cell Biol. 2015 Sep;16(9):519-32
pubmed: 26296162
Plant Cell. 2014 Jan;26(1):195-209
pubmed: 24464291
BMC Genomics. 2017 Jun 26;18(1):481
pubmed: 28651543
Plant Sci. 2015 Jul;236:146-56
pubmed: 26025528
Physiol Plant. 2020 Jul;169(3):407-417
pubmed: 32222987
IET Nanobiotechnol. 2016 Aug;10(4):222-9
pubmed: 27463793
Plant J. 2019 May;98(4):727-744
pubmed: 30729606
Ecotoxicol Environ Saf. 2021 Jan 15;208:111697
pubmed: 33396028
Genome Biol. 2013 Jun 14;14(6):R59
pubmed: 23767915
Nat Rev Genet. 2010 Mar;11(3):204-20
pubmed: 20142834
Nat Rev Mol Cell Biol. 2018 Aug;19(8):489-506
pubmed: 29784956
Dev Cell. 2016 Jul 25;38(2):186-200
pubmed: 27396363
Biochim Biophys Acta. 2007 May-Jun;1769(5-6):308-15
pubmed: 17320987
Plant Cell. 2015 Mar;27(3):926-43
pubmed: 25736060
PLoS One. 2013 Nov 11;8(11):e80253
pubmed: 24244664
J Plant Physiol. 2020 Oct;253:153261
pubmed: 32947244
Nucleic Acids Res. 2017 Jan 4;45(D1):D264-D270
pubmed: 27789692
Biotechnol Lett. 2012 May;34(5):889-93
pubmed: 22215378
Plant Cell. 2012 Dec;24(12):4892-906
pubmed: 23209114
Front Immunol. 2019 Jan 04;9:3083
pubmed: 30662442
Mol Plant. 2019 Feb 4;12(2):263-277
pubmed: 30578854
Plant Cell. 2011 Jan;23(1):396-411
pubmed: 21258002
Int J Mol Sci. 2019 Nov 08;20(22):
pubmed: 31717266
BMC Genomics. 2021 Jul 17;22(1):547
pubmed: 34273949
Mol Plant. 2018 Oct 8;11(10):1219-1221
pubmed: 30118810
New Phytol. 2019 Aug;223(3):1372-1387
pubmed: 31038749
Genome Biol. 2019 Jun 17;20(1):123
pubmed: 31208436
Plant Physiol. 2012 Feb;158(2):981-95
pubmed: 22170978
Front Plant Sci. 2020 Mar 11;11:277
pubmed: 32218796
Annu Rev Plant Biol. 2018 Apr 29;69:209-236
pubmed: 29489394
Planta. 2019 Jul;250(1):23-40
pubmed: 30993403
J Agric Food Chem. 2020 Feb 19;68(7):1958-1965
pubmed: 32003983
Plant Physiol. 2015 Nov;169(3):2080-101
pubmed: 26351307
Plant Physiol. 2012 Mar;158(3):1279-92
pubmed: 22247272
Trends Biochem Sci. 2019 Jan;44(1):21-32
pubmed: 30522862
Nat Plants. 2016 Nov 03;2(11):16163
pubmed: 27808230
Proc Natl Acad Sci U S A. 1998 May 12;95(10):5824-9
pubmed: 9576969
Plant Mol Biol. 2016 Nov;92(4-5):425-443
pubmed: 27534420
Front Plant Sci. 2016 Sep 12;7:1370
pubmed: 27672390
PLoS Genet. 2014 Dec 11;10(12):e1004842
pubmed: 25503602
Cell Rep. 2018 Oct 30;25(5):1146-1157.e3
pubmed: 30380407
J Integr Plant Biol. 2020 Jan;62(1):148-159
pubmed: 31628716
Front Plant Sci. 2021 Jan 06;11:603246
pubmed: 33488652
Cell. 2012 Sep 28;151(1):167-80
pubmed: 23021223
Annu Rev Biochem. 2007;76:75-100
pubmed: 17362198
Plant Cell. 2015 Feb;27(2):337-48
pubmed: 25670769
Nanomaterials (Basel). 2020 Jul 16;10(7):
pubmed: 32708646
Front Plant Sci. 2021 May 21;12:596236
pubmed: 34093600
Front Plant Sci. 2018 Jan 17;8:2274
pubmed: 29387079
Plant Cell Environ. 2020 Jan;43(1):55-75
pubmed: 31677283
PLoS Genet. 2020 Oct 8;16(10):e1009034
pubmed: 33031395
BMC Genomics. 2020 Aug 14;21(1):560
pubmed: 32799794
Plant Cell. 2019 Mar;31(3):663-686
pubmed: 30538157
Trends Genet. 2022 Feb;38(2):182-193
pubmed: 34294427
Cell. 2013 Mar 28;153(1):193-205
pubmed: 23540698
Genomics Proteomics Bioinformatics. 2017 Oct;15(5):301-312
pubmed: 29017967
Int J Mol Sci. 2020 Oct 09;21(20):
pubmed: 33050358
Proc Natl Acad Sci U S A. 2016 Dec 20;113(51):E8335-E8343
pubmed: 27930298
New Phytol. 2017 Jul;215(1):157-172
pubmed: 28503769
Cell Res. 2011 Mar;21(3):381-95
pubmed: 21321607
EMBO J. 2016 Jan 18;35(2):162-75
pubmed: 26657708
Plant Cell Physiol. 2015 Jan;56(1):73-83
pubmed: 25336111
Int J Mol Sci. 2020 Feb 19;21(4):
pubmed: 32093110
Plant J. 2015 Oct;84(1):169-87
pubmed: 26312768
Elife. 2016 Sep 28;5:
pubmed: 27680998
Front Plant Sci. 2020 Jun 26;11:944
pubmed: 32754171
BMC Genomics. 2017 Nov 2;18(1):843
pubmed: 29096602
Environ Sci Pollut Res Int. 2014 Feb;21(3):1723-1737
pubmed: 23975714
PeerJ. 2020 Apr 29;8:e8932
pubmed: 32391199
Curr Biol. 2019 Aug 5;29(15):2465-2476.e5
pubmed: 31327714
Biosystems. 2018 Feb;164:49-59
pubmed: 29158132
Front Plant Sci. 2016 Feb 23;7:187
pubmed: 26941757
Front Plant Sci. 2020 Dec 10;11:595603
pubmed: 33362826
J Exp Bot. 2019 Jan 7;70(2):701-713
pubmed: 30364999
Mol Biosyst. 2017 Oct 24;13(11):2289-2302
pubmed: 28872648
J Exp Bot. 2020 Aug 17;71(17):5179-5190
pubmed: 32333777
Plant J. 2015 Dec;84(6):1178-91
pubmed: 26576681
Plant Physiol Biochem. 2020 Oct;155:709-715
pubmed: 32862020
Plant Physiol Biochem. 2017 Jan;110:2-12
pubmed: 27601425
Planta. 2020 Mar 9;251(4):76
pubmed: 32152761
Mol Genet Genomics. 2007 May;277(5):589-600
pubmed: 17273870
Physiol Mol Biol Plants. 2013 Jul;19(3):379-87
pubmed: 24431506
Nature. 2021 Jun;594(7863):424-429
pubmed: 34040255
Nat Chem Biol. 2020 Sep;16(9):955-963
pubmed: 32451507
J Agric Food Chem. 2011 Apr 27;59(8):3485-98
pubmed: 21405020
Front Plant Sci. 2015 Mar 02;6:114
pubmed: 25784920
Genome Biol. 2017 Jun 27;18(1):124
pubmed: 28655328
Mol Gen Genet. 1992 Feb;231(3):345-52
pubmed: 1538691
Tree Physiol. 2013 Oct;33(10):1084-98
pubmed: 24218245
Front Cell Dev Biol. 2021 Mar 16;9:628415
pubmed: 33816473
J Exp Bot. 2014 May;65(8):2119-35
pubmed: 24604734
Plant Cell. 2014 Apr 11;26(4):1764-1780
pubmed: 24728648
Annu Rev Genet. 2016 Nov 23;50:467-491
pubmed: 27732791
Mol Gen Genet. 1994 May 25;243(4):390-9
pubmed: 8202084
Plant Cell. 2017 Dec;29(12):2995-3011
pubmed: 29180595
Plant Cell Physiol. 2012 May;53(5):847-56
pubmed: 22505693
Plant Cell. 2017 Apr;29(4):791-807
pubmed: 28258158
Plant Cell. 1995 Jul;7(7):1099-1111
pubmed: 12242400
J Genet Genomics. 2015 Jul 20;42(7):393-402
pubmed: 26233894
J Exp Bot. 2011 Mar;62(6):1951-60
pubmed: 21193578
Chemosphere. 2020 Jul;251:126310
pubmed: 32443249
Plant J. 2019 Feb;97(3):587-602
pubmed: 30394596
Front Plant Sci. 2015 Jan 21;6:5
pubmed: 25653665
J Plant Res. 2017 Jan;130(1):7-16
pubmed: 27878651
Gene. 1997 Dec 19;204(1-2):25-33
pubmed: 9434162
Biochem Biophys Res Commun. 2018 Sep 5;503(2):402-407
pubmed: 30055799
Elife. 2019 Mar 26;8:
pubmed: 30910007
J Exp Bot. 2020 Aug 17;71(17):5223-5236
pubmed: 32279074
Plant Cell. 2008 May;20(5):1278-88
pubmed: 18505803
Sci Rep. 2020 May 15;10(1):8013
pubmed: 32415195
Plant Physiol. 2019 Oct;181(2):609-629
pubmed: 31395615
J Plant Physiol. 2017 Sep;216:35-43
pubmed: 28575745
Proc Natl Acad Sci U S A. 2018 Jun 5;115(23):E5400-E5409
pubmed: 29784800
Theor Appl Genet. 1995 Dec;91(8):1257-64
pubmed: 24170055
Plant Biotechnol J. 2019 Mar;17(3):556-568
pubmed: 30117653
Curr Opin Genet Dev. 1995 Apr;5(2):234-42
pubmed: 7613094
Front Plant Sci. 2021 Jan 12;11:613004
pubmed: 33510757
Plant J. 2008 Feb;53(3):475-87
pubmed: 17988222
Front Plant Sci. 2014 Jun 24;5:290
pubmed: 25009544
BMC Plant Biol. 2020 Oct 12;20(1):466
pubmed: 33046001
New Phytol. 2019 May;222(3):1561-1572
pubmed: 30623449
Proc Natl Acad Sci U S A. 2017 Oct 3;114(40):10755-10760
pubmed: 28923956
Protoplasma. 2017 Mar;254(2):987-996
pubmed: 27488925
Plants (Basel). 2020 Mar 25;9(4):
pubmed: 32218186
Front Plant Sci. 2017 Jul 10;8:1179
pubmed: 28740501
Front Physiol. 2017 Sep 08;8:674
pubmed: 28943851
Front Plant Sci. 2020 Jan 24;10:1728
pubmed: 32038692
Front Plant Sci. 2019 Oct 04;10:1236
pubmed: 31636650
Front Plant Sci. 2018 Nov 20;9:1677
pubmed: 30524458
Elife. 2016 May 31;5:
pubmed: 27242129
Environ Sci Pollut Res Int. 2014;21(14):8858-69
pubmed: 24723349
DNA Cell Biol. 2017 Apr;36(4):283-294
pubmed: 28384069
Nat Plants. 2021 Feb;7(2):184-197
pubmed: 33495557
Protein Expr Purif. 2012 May;83(1):104-11
pubmed: 22459921
Front Plant Sci. 2017 May 29;8:873
pubmed: 28611800
Gene. 2019 Nov 15;718:144018
pubmed: 31454543
PeerJ. 2018 Nov 30;6:e6019
pubmed: 30533308
Plant J. 2006 May;46(4):613-27
pubmed: 16640598
Genes Genomics. 2022 Mar;44(3):279-297
pubmed: 34837631
Plant Physiol Biochem. 2016 Mar;100:37-46
pubmed: 26773543
Nat Plants. 2017 Jun 26;3:17097
pubmed: 28650429
Brief Bioinform. 2018 Sep 28;19(5):1035-1050
pubmed: 28419324
Int J Mol Sci. 2021 Jul 01;22(13):
pubmed: 34281171
Plant Cell Rep. 2017 May;36(5):759-772
pubmed: 27999979
Plant Cell. 2008 Apr;20(4):827-42
pubmed: 18398050
New Phytol. 2019 May;222(3):1420-1433
pubmed: 30664249
Sci Rep. 2020 May 13;10(1):7938
pubmed: 32404881
Proc Natl Acad Sci U S A. 1996 Feb 20;93(4):1449-52
pubmed: 8643652
Proc Natl Acad Sci U S A. 2015 Mar 3;112(9):2900-5
pubmed: 25730865
Mol Plant. 2014 Mar;7(3):502-13
pubmed: 24482435
Front Plant Sci. 2020 Dec 16;11:602625
pubmed: 33391313
Front Genet. 2021 Apr 29;12:668317
pubmed: 33995495
Plant Sci. 2019 Jun;283:355-365
pubmed: 31128706
Genes (Basel). 2017 Nov 09;8(11):
pubmed: 29120372
BMC Genomics. 2018 Jan 24;19(1):78
pubmed: 29361906
Plant Physiol. 2020 Jan;182(1):15-26
pubmed: 31685643
Plant Cell Environ. 2018 Jun;41(6):1394-1406
pubmed: 29447428
Genome Biol. 2018 Sep 25;19(1):144
pubmed: 30253806
PLoS Genet. 2012;8(7):e1002825
pubmed: 22829781
Nat Commun. 2019 Apr 12;10(1):1713
pubmed: 30979883
Environ Mol Mutagen. 2018 Jul;59(6):464-475
pubmed: 29656392
Biology (Basel). 2021 Aug 11;10(8):
pubmed: 34439998
Plant Cell. 2013 Aug;25(8):2878-91
pubmed: 23943859
Nat Commun. 2012 Mar 13;3:740
pubmed: 22415831
Mutat Res. 2015 Apr;774:49-58
pubmed: 25829105
Front Plant Sci. 2020 Sep 04;11:555794
pubmed: 33013972
Nanomaterials (Basel). 2020 Aug 04;10(8):
pubmed: 32759824
Plant Cell Physiol. 2015 May;56(5):965-76
pubmed: 25670712
Curr Opin Plant Biol. 2021 Jun;61:101989
pubmed: 33445144
Plant Physiol Biochem. 2017 Sep;118:551-560
pubmed: 28780454
Plants (Basel). 2021 May 30;10(6):
pubmed: 34070712
Plant Mol Biol. 2000 Jun;43(2-3):179-88
pubmed: 10999403
J Integr Plant Biol. 2021 Mar;63(3):438-450
pubmed: 33421288
Mol Plant. 2017 Oct 9;10(10):1258-1273
pubmed: 28893714
Front Plant Sci. 2016 Nov 08;7:1675
pubmed: 27877189
J Exp Bot. 2020 Aug 17;71(17):5247-5255
pubmed: 32215554
Plant Sci. 2020 Feb;291:110326
pubmed: 31928665
Plant Mol Biol. 2013 May;82(1-2):113-29
pubmed: 23483290
FEBS Lett. 2012 Jun 12;586(12):1742-7
pubmed: 22613571