Sequence Modulates Polypeptoid Hydration Water Structure and Dynamics.


Journal

Biomacromolecules
ISSN: 1526-4602
Titre abrégé: Biomacromolecules
Pays: United States
ID NLM: 100892849

Informations de publication

Date de publication:
11 04 2022
Historique:
pubmed: 12 3 2022
medline: 13 4 2022
entrez: 11 3 2022
Statut: ppublish

Résumé

We use molecular dynamics simulations to investigate the effect of polypeptoid sequence on the structure and dynamics of its hydration waters. Polypeptoids provide an excellent platform to study small-molecule hydration in disordered polymers, as they can be precisely synthesized with a variety of sidechain chemistries. We examine water behavior near a set of peptoid oligomers in which the number and placement of nonpolar versus polar sidechains are systematically varied. To do this, we leverage a new computational workflow enabling accurate sampling of polypeptoid conformations. We find that the hydration waters are less dense, are more tetrahedral, and have slower dynamics compared to bulk water. The magnitude of these shifts increases with the number of nonpolar groups. We also find that shifts in the water structure and dynamics are strongly correlated, suggesting that experimental insight into the dynamics of hydration water obtained by Overhauser dynamic nuclear polarization (ODNP) also contains information about water structural properties. We then demonstrate the ability of ODNP to probe site-specific dynamics of hydration water near these model peptoid systems.

Identifiants

pubmed: 35274944
doi: 10.1021/acs.biomac.1c01687
doi:

Substances chimiques

Peptoids 0
Water 059QF0KO0R

Types de publication

Journal Article Research Support, U.S. Gov't, Non-P.H.S. Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

1745-1756

Auteurs

Sally Jiao (S)

Department of Chemical Engineering, University of California, Santa Barbara, California 93106, United States.

Daniela M Rivera Mirabal (DM)

Department of Chemical Engineering, University of California, Santa Barbara, California 93106, United States.
Department of Chemical Engineering, University of Puerto Rico, Mayagüez, Puerto Rico 00681, United States.

Audra J DeStefano (AJ)

Department of Chemical Engineering, University of California, Santa Barbara, California 93106, United States.

Rachel A Segalman (RA)

Department of Chemical Engineering, University of California, Santa Barbara, California 93106, United States.
Department of Materials, University of California, Santa Barbara, California 93106, United States.

Songi Han (S)

Department of Chemical Engineering, University of California, Santa Barbara, California 93106, United States.
Department of Chemistry and Biochemistry, University of California, Santa Barbara, California 93106, United States.

M Scott Shell (MS)

Department of Chemical Engineering, University of California, Santa Barbara, California 93106, United States.

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Classifications MeSH