TAILS Identifies Candidate Substrates and Biomarkers of ADAMTS7, a Therapeutic Protease Target in Coronary Artery Disease.
ADAMTS
ADAMTS7
Biomarkers
Coronary artery disease
Degradomics
EFEMP1
Mass spectrometry
Protease
Substrate identification
TAILS proteomics
Journal
Molecular & cellular proteomics : MCP
ISSN: 1535-9484
Titre abrégé: Mol Cell Proteomics
Pays: United States
ID NLM: 101125647
Informations de publication
Date de publication:
04 2022
04 2022
Historique:
received:
05
12
2021
revised:
05
02
2022
accepted:
02
03
2022
pubmed:
15
3
2022
medline:
27
4
2022
entrez:
14
3
2022
Statut:
ppublish
Résumé
Loss-of-function mutations in the secreted enzyme ADAMTS7 (a disintegrin and metalloproteinase with thrombospondin motifs 7) are associated with protection for coronary artery disease. ADAMTS7 catalytic inhibition has been proposed as a therapeutic strategy for treating coronary artery disease; however, the lack of an endogenous substrate has hindered the development of activity-based biomarkers. To identify ADAMTS7 extracellular substrates and their cleavage sites relevant to vascular disease, we used TAILS (terminal amine isotopic labeling of substrates), a method for identifying protease-generated neo-N termini. We compared the secreted proteome of vascular smooth muscle and endothelial cells expressing either full-length mouse ADAMTS7 WT, catalytic mutant ADAMTS7 E373Q, or a control luciferase adenovirus. Significantly enriched N-terminal cleavage sites in ADAMTS7 WT samples were compared to the negative control conditions and filtered for stringency, resulting in catalogs of high confidence candidate ADAMTS7 cleavage sites from our three independent TAILS experiments. Within the overlap of these discovery sets, we identified 24 unique cleavage sites from 16 protein substrates, including cleavage sites in EFEMP1 (EGF-containing fibulin-like extracellular matrix protein 1/Fibulin-3). The ADAMTS7 TAILS preference for EFEMP1 cleavage at the amino acids 123.124 over the adjacent 124.125 site was validated using both endogenous EFEMP1 and purified EFEMP1 in a binary in vitro cleavage assay. Collectively, our TAILS discovery experiments have uncovered hundreds of potential substrates and cleavage sites to explore disease-related biological substrates and facilitate activity-based ADAMTS7 biomarker development.
Identifiants
pubmed: 35283288
pii: S1535-9476(22)00031-7
doi: 10.1016/j.mcpro.2022.100223
pmc: PMC9035411
pii:
doi:
Substances chimiques
Biomarkers
0
Proteome
0
Endopeptidases
EC 3.4.-
Peptide Hydrolases
EC 3.4.-
ADAMTS7 Protein
EC 3.4.24.-
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Research Support, N.I.H., Extramural
Langues
eng
Sous-ensembles de citation
IM
Pagination
100223Informations de copyright
Copyright © 2022 The Authors. Published by Elsevier Inc. All rights reserved.
Déclaration de conflit d'intérêts
Conflicts of interest B. T. M., N. H. E., and Y. X. are named inventors on patent applications relating to ADAMTS7 assays and compounds. B. T. M., A. A., and N. H. E are named inventors on a patent application relating to ADAMTS7 biomarkers. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.
Références
Front Mol Biosci. 2021 Mar 19;8:643178
pubmed: 33816558
Genome Biol. 2015 May 30;16:113
pubmed: 26025392
Arthritis Rheumatol. 2018 Nov;70(11):1745-1756
pubmed: 29750395
Nat Genet. 2011 Mar 06;43(4):339-44
pubmed: 21378988
J Biol Chem. 2018 Nov 16;293(46):17953-17970
pubmed: 30262666
Mol Cell Proteomics. 2016 Jul;15(7):2515-24
pubmed: 27122596
Dev Cell. 2009 Nov;17(5):687-98
pubmed: 19922873
Matrix Biol. 2017 May;59:23-38
pubmed: 27471094
J Am Heart Assoc. 2017 Oct 31;6(11):
pubmed: 29089340
EMBO J. 1997 Jun 2;16(11):3035-43
pubmed: 9214621
J Biol Chem. 2001 May 25;276(21):17932-40
pubmed: 11279086
Am J Pathol. 2015 Jun;185(6):1552-63
pubmed: 25843683
Circ Res. 2021 Aug 6;129(4):458-470
pubmed: 34176299
Mol Cell Proteomics. 2010 May;9(5):894-911
pubmed: 20305284
Hum Mol Genet. 2007 Dec 15;16(24):3059-70
pubmed: 17872905
Physiol Genomics. 2016 Nov 1;48(11):810-815
pubmed: 27614204
Sci China Life Sci. 2015 Jul;58(7):674-81
pubmed: 25921940
Eur J Hum Genet. 2020 Apr;28(4):445-452
pubmed: 31792352
Medicine (Baltimore). 2019 Oct;98(43):e17438
pubmed: 31651847
J Biol Chem. 2006 Jun 9;281(23):15800-8
pubmed: 16611630
Matrix Biol. 2018 Oct;71-72:225-239
pubmed: 29885460
Protein Sci. 2014 Feb;23(2):123-44
pubmed: 24596965
Biochem Biophys Res Commun. 2002 Apr 26;293(1):501-8
pubmed: 12054629
J Biol Chem. 2002 May 3;277(18):16059-66
pubmed: 11854269
Circulation. 2015 Mar 31;131(13):1202-1213
pubmed: 25712206
Cardiovasc Res. 2018 Jul 15;114(9):1241-1257
pubmed: 29617720
J Biol Chem. 2019 May 17;294(20):8037-8045
pubmed: 30926607
Lancet. 2011 Jan 29;377(9763):383-92
pubmed: 21239051
Growth Factors. 2008 Apr;26(2):80-91
pubmed: 18428027
Am J Hum Genet. 2013 Mar 7;92(3):366-74
pubmed: 23415669
BMC Genomics. 2005 Oct 20;6:145
pubmed: 16242023
Matrix Biol. 2017 Jan;57-58:55-75
pubmed: 27746220
Sci Rep. 2017 Jun 16;7(1):3753
pubmed: 28623250
FASEB J. 2016 May;30(5):1741-56
pubmed: 26740262
J Biol Chem. 2002 Sep 27;277(39):36288-95
pubmed: 12114504
J Biol Chem. 2001 Apr 20;276(16):13372-8
pubmed: 11278559
PLoS Genet. 2008 Feb 29;4(2):e1000003
pubmed: 18454205
JCI Insight. 2018 Apr 5;3(7):
pubmed: 29618652
J Cell Commun Signal. 2018 Mar;12(1):45-53
pubmed: 29086201
Matrix Biol. 2004 Jul;23(4):219-30
pubmed: 15296936
J Biol Chem. 2004 Aug 20;279(34):35159-75
pubmed: 15192113
Nat Genet. 2011 Mar 06;43(4):333-8
pubmed: 21378990
Genome Res. 2004 Jun;14(6):1188-90
pubmed: 15173120
Nat Rev Mol Cell Biol. 2003 Jun;4(6):479-89
pubmed: 12778127
Circ Res. 2009 Mar 13;104(5):688-98
pubmed: 19168437
J Biol Chem. 2019 Jul 19;294(29):11087-11100
pubmed: 31152061
FASEB J. 2006 May;20(7):988-90
pubmed: 16585064
Int J Exp Pathol. 2020 Feb;101(1-2):4-20
pubmed: 32219922
Nat Protoc. 2011 Sep 22;6(10):1578-611
pubmed: 21959240
Mol Cell Biol. 2009 Aug;29(15):4201-19
pubmed: 19487464
Nat Methods. 2009 Nov;6(11):786-7
pubmed: 19876014
Nat Commun. 2019 Aug 22;10(1):3781
pubmed: 31439947
J Med Chem. 2021 Mar 25;64(6):2937-2952
pubmed: 33719441
J Biol Chem. 2003 Mar 14;278(11):9503-13
pubmed: 12514189
J Biol Chem. 2013 Aug 2;288(31):22821-35
pubmed: 23782690
Cell Mol Life Sci. 2013 Jan;70(2):309-33
pubmed: 22940918
Circulation. 2015 Mar 31;131(13):1191-201
pubmed: 25712208
Nat Protoc. 2017 Aug;12(8):1683-1701
pubmed: 28749931