System-Level Analysis of Transcriptional and Translational Regulatory Elements in

Streptomyces differential gene expression regulatory elements sigma factor transcript 3′-end positions transcription factor

Journal

Frontiers in bioengineering and biotechnology
ISSN: 2296-4185
Titre abrégé: Front Bioeng Biotechnol
Pays: Switzerland
ID NLM: 101632513

Informations de publication

Date de publication:
2022
Historique:
received: 27 12 2021
accepted: 10 02 2022
entrez: 14 3 2022
pubmed: 15 3 2022
medline: 15 3 2022
Statut: epublish

Résumé

Bacteria belonging to

Identifiants

pubmed: 35284422
doi: 10.3389/fbioe.2022.844200
pii: 844200
pmc: PMC8914203
doi:

Types de publication

Journal Article

Langues

eng

Pagination

844200

Informations de copyright

Copyright © 2022 Hwang, Lee, Choe, Lee, Kim, Kim, Kim, Kim, Ahn, Lee, Palsson and Cho.

Déclaration de conflit d'intérêts

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Références

Nat Prod Rep. 2011 Jul;28(7):1311-33
pubmed: 21611665
Genome Biol. 2014;15(12):550
pubmed: 25516281
Elife. 2020 May 19;9:
pubmed: 32427100
Future Microbiol. 2010 Mar;5(3):419-29
pubmed: 20210552
Appl Environ Microbiol. 2011 Jun;77(12):3905-15
pubmed: 21531832
Cell. 2018 Apr 19;173(3):749-761.e38
pubmed: 29606352
Genome Res. 2004 Jun;14(6):1188-90
pubmed: 15173120
Bioinformatics. 2005 Aug 15;21(16):3448-9
pubmed: 15972284
Microbiology (Reading). 2009 Jul;155(Pt 7):2197-2210
pubmed: 19389771
Nucleic Acids Res. 2018 Jul 27;46(13):6797-6805
pubmed: 29669055
J Biol Chem. 2005 Mar 4;280(9):8309-15
pubmed: 15615709
BMC Genomics. 2010 Mar 26;11:202
pubmed: 20338070
PLoS Genet. 2014 Aug 07;10(8):e1004554
pubmed: 25101778
Biochim Biophys Acta. 2015 Aug;1849(8):1017-39
pubmed: 26093238
Nat Commun. 2016 Mar 31;7:11062
pubmed: 27029515
J Bacteriol. 2011 May;193(9):2242-51
pubmed: 21378195
Nat Rev Microbiol. 2018 May;16(5):304-315
pubmed: 29456243
Proteomics. 2020 Dec;20(24):e2070135
pubmed: 33325652
Algorithms Mol Biol. 2011 Nov 24;6:26
pubmed: 22115189
Antonie Van Leeuwenhoek. 1993-1994;64(2):177-86
pubmed: 8092858
Bioinformatics. 2011 Apr 1;27(7):1017-8
pubmed: 21330290
Cell Rep. 2013 Nov 27;5(4):1121-31
pubmed: 24268774
Sci Rep. 2017 Feb 14;7:42129
pubmed: 28195138
mSystems. 2021 May 4;6(3):
pubmed: 33947798
Elife. 2019 Feb 06;8:
pubmed: 30724162
Genome Biol. 2007;8(8):R161
pubmed: 17683547
Metab Eng. 2013 Nov;20:187-97
pubmed: 24148183
Appl Microbiol Biotechnol. 2015 Mar;99(5):2329-37
pubmed: 25547841
Mol Microbiol. 2011 Sep;81(6):1607-22
pubmed: 21883521
FEMS Microbiol Lett. 2000 Aug 1;189(1):93-5
pubmed: 10913872
RNA Biol. 2011 Sep-Oct;8(5):913-21
pubmed: 21788735
Proc Natl Acad Sci U S A. 1992 Feb 15;89(4):1453-7
pubmed: 1741399
Nucleic Acids Res. 2003 Jan 1;31(1):439-41
pubmed: 12520045
J Bacteriol. 2008 Jun;190(11):4050-60
pubmed: 18375553
Mol Microbiol. 1999 Oct;34(1):102-11
pubmed: 10540289
Sci Data. 2020 May 8;7(1):138
pubmed: 32385251
Front Microbiol. 2019 Sep 06;10:2074
pubmed: 31555254
Mol Cell. 1999 Apr;3(4):495-504
pubmed: 10230402
J Bacteriol. 1996 Jan;178(2):490-5
pubmed: 8550471
ISME J. 2020 May;14(5):1111-1124
pubmed: 31992858
J Bacteriol. 2011 Dec;193(23):6712-23
pubmed: 21965564
Mol Biosyst. 2009 Dec;5(12):1512-26
pubmed: 20023718
Appl Microbiol Biotechnol. 2018 Apr;102(7):3243-3253
pubmed: 29455385
FEBS Open Bio. 2013 Jan 11;3:71-7
pubmed: 23772377
Proc Natl Acad Sci U S A. 2010 Feb 9;107(6):2646-51
pubmed: 20133795
J Antibiot (Tokyo). 2013 Jul;66(7):387-400
pubmed: 23612726
J Bacteriol. 2006 Apr;188(7):2512-20
pubmed: 16547038
BMC Biol. 2017 Aug 30;15(1):76
pubmed: 28854918
Annu Rev Biochem. 1984;53:75-117
pubmed: 6206783
J Microbiol Biotechnol. 2015 May;25(5):658-61
pubmed: 25406531
Mol Gen Genet. 1989 Jan;215(2):355-7
pubmed: 2710105
Proc Natl Acad Sci U S A. 2007 Feb 13;104(7):2378-83
pubmed: 17277085
Nucleic Acids Res. 2019 Jul 9;47(12):6114-6129
pubmed: 31131406
J Ind Microbiol Biotechnol. 2003 Aug;30(8):462-7
pubmed: 12884127
BMC Genomics. 2014 Dec 16;15:1115
pubmed: 25512115
Arch Pharm (Weinheim). 2015 Jul;348(7):455-62
pubmed: 25917027
Microbiology (Reading). 1999 Sep;145 ( Pt 9):2281-2292
pubmed: 10517581
Adv Microb Physiol. 2000;42:47-238
pubmed: 10907551
J Microbiol Biotechnol. 2009 Feb;19(2):121-7
pubmed: 19307759
Genomics. 2009 Aug;94(2):110-6
pubmed: 19393739
Nat Commun. 2016 Jun 02;7:11605
pubmed: 27251447
Nucleic Acids Res. 2009 Jul;37(Web Server issue):W202-8
pubmed: 19458158
Nucleic Acids Res. 2019 Jul 2;47(W1):W81-W87
pubmed: 31032519

Auteurs

Soonkyu Hwang (S)

Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, South Korea.
KAIST Institute for the BioCentury, Korea Advanced Institute of Science and Technology, Daejeon, South Korea.

Namil Lee (N)

Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, South Korea.
KAIST Institute for the BioCentury, Korea Advanced Institute of Science and Technology, Daejeon, South Korea.

Donghui Choe (D)

Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, South Korea.
KAIST Institute for the BioCentury, Korea Advanced Institute of Science and Technology, Daejeon, South Korea.

Yongjae Lee (Y)

Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, South Korea.
KAIST Institute for the BioCentury, Korea Advanced Institute of Science and Technology, Daejeon, South Korea.

Woori Kim (W)

Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, South Korea.
KAIST Institute for the BioCentury, Korea Advanced Institute of Science and Technology, Daejeon, South Korea.

Ji Hun Kim (JH)

Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, South Korea.
KAIST Institute for the BioCentury, Korea Advanced Institute of Science and Technology, Daejeon, South Korea.

Gahyeon Kim (G)

Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, South Korea.
KAIST Institute for the BioCentury, Korea Advanced Institute of Science and Technology, Daejeon, South Korea.

Hyeseong Kim (H)

Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, South Korea.
KAIST Institute for the BioCentury, Korea Advanced Institute of Science and Technology, Daejeon, South Korea.

Neung-Ho Ahn (NH)

Biological and Genetic Resources Assessment Division, National Institute of Biological Resources, Incheon, South Korea.

Byoung-Hee Lee (BH)

Biological and Genetic Resources Assessment Division, National Institute of Biological Resources, Incheon, South Korea.

Bernhard O Palsson (BO)

Department of Bioengineering, University of California, San Diego, La Jolla, CA, United States.
Department of Pediatrics, University of California, San Diego, La Jolla, CA, United States.
Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Lyngby, Denmark.

Byung-Kwan Cho (BK)

Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, South Korea.
KAIST Institute for the BioCentury, Korea Advanced Institute of Science and Technology, Daejeon, South Korea.

Classifications MeSH