Integrated model for COVID-19 diagnosis based on computed tomography artificial intelligence, and clinical features: a multicenter cohort study.

COVID-19 Light Gradient Boosting Machine (LightGBM) decision support tool diagnosis machine learning

Journal

Annals of translational medicine
ISSN: 2305-5839
Titre abrégé: Ann Transl Med
Pays: China
ID NLM: 101617978

Informations de publication

Date de publication:
Feb 2022
Historique:
received: 19 10 2021
accepted: 14 01 2022
entrez: 14 3 2022
pubmed: 15 3 2022
medline: 15 3 2022
Statut: ppublish

Résumé

We developed and validated a machine learning diagnostic model for the novel coronavirus (COVID-19) disease, integrating artificial-intelligence-based computed tomography (CT) imaging and clinical features. We conducted a retrospective cohort study in 11 Japanese tertiary care facilities that treated COVID-19 patients. Participants were tested using both real-time reverse transcription polymerase chain reaction (RT-PCR) and chest CTs between January 1 and May 30, 2020. We chronologically split the dataset in each hospital into training and test sets, containing patients in a 7:3 ratio. A Light Gradient Boosting Machine model was used for the analysis. A total of 703 patients were included, and two models-the full model and the A-blood model-were developed for their diagnosis. The A-blood model included eight variables (the Ali-M3 confidence, along with seven clinical features of blood counts and biochemistry markers). The areas under the receiver-operator curve of both models [0.91, 95% confidence interval (CI): 0.86 to 0.95 for the full model and 0.90, 95% CI: 0.86 to 0.94 for the A-blood model] were better than that of the Ali-M3 confidence (0.78, 95% CI: 0.71 to 0.83) in the test set. The A-blood model, a COVID-19 diagnostic model developed in this study, combines machine-learning and CT evaluation with blood test data and performs better than the Ali-M3 framework existing for this purpose. This would significantly aid physicians in making a quicker diagnosis of COVID-19.

Sections du résumé

Background UNASSIGNED
We developed and validated a machine learning diagnostic model for the novel coronavirus (COVID-19) disease, integrating artificial-intelligence-based computed tomography (CT) imaging and clinical features.
Methods UNASSIGNED
We conducted a retrospective cohort study in 11 Japanese tertiary care facilities that treated COVID-19 patients. Participants were tested using both real-time reverse transcription polymerase chain reaction (RT-PCR) and chest CTs between January 1 and May 30, 2020. We chronologically split the dataset in each hospital into training and test sets, containing patients in a 7:3 ratio. A Light Gradient Boosting Machine model was used for the analysis.
Results UNASSIGNED
A total of 703 patients were included, and two models-the full model and the A-blood model-were developed for their diagnosis. The A-blood model included eight variables (the Ali-M3 confidence, along with seven clinical features of blood counts and biochemistry markers). The areas under the receiver-operator curve of both models [0.91, 95% confidence interval (CI): 0.86 to 0.95 for the full model and 0.90, 95% CI: 0.86 to 0.94 for the A-blood model] were better than that of the Ali-M3 confidence (0.78, 95% CI: 0.71 to 0.83) in the test set.
Conclusions UNASSIGNED
The A-blood model, a COVID-19 diagnostic model developed in this study, combines machine-learning and CT evaluation with blood test data and performs better than the Ali-M3 framework existing for this purpose. This would significantly aid physicians in making a quicker diagnosis of COVID-19.

Identifiants

pubmed: 35284557
doi: 10.21037/atm-21-5571
pii: atm-10-03-130
pmc: PMC8904977
doi:

Types de publication

Journal Article

Langues

eng

Pagination

130

Informations de copyright

2022 Annals of Translational Medicine. All rights reserved.

Déclaration de conflit d'intérêts

Conflicts of Interest: All authors have completed the ICMJE unified disclosure form (available at https://atm.amegroups.com/article/view/10.21037/atm-21-5571/coif). Yuki Kataoka serves as an unpaid editorial board member of Annals of Translational Medicine from July 2020 to June 2022. Yuki Kataoka, Yuya Kimura, TI, YM, JM, JK, KT, HF, TH, AK, FH, SI, SF report that this study was partially supported by Kyoto University managing fund for English editing; the article processing fee was supported by the Scientific Research Works Peer Support Group (SRWS-PSG); M3 Inc. and Clinical Porter provided free Ali-M3 analysis and data storage. TI also reports that the analysis of the CT by Ali-M3 was carried out by Nobori on behalf of M3. M3 and Nobori did not know the patients’ data including the result of RT-PCR. JM also reports that receiving a lecture fee from M3 Inc. The other author has no conflicts of interest to declare.

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Auteurs

Yuki Kataoka (Y)

Department of Internal Medicine, Kyoto Min-Iren Asukai Hospital, Tanaka Asukai-cho, Kyoto, Japan.
Section of Clinical Epidemiology, Department of Community Medicine, Kyoto University Graduate School of Medicine, Sakyo-ku, Kyoto, Japan.
Department of Healthcare Epidemiology, Kyoto University Graduate School of Medicine/Public Health, Sakyo-ku, Kyoto, Japan.
Scientific Research Works Peer Support Group (SRWS-PSG), Osaka, Japan.

Yuya Kimura (Y)

Clinical Research Center, Department of Respiratory Medicine, National Hospital Organization Tokyo National Hospital, Kiyose-shi, Tokyo, Japan.

Tatsuyoshi Ikenoue (T)

Human Health Sciences, Kyoto University Graduate School of Medicine, Sakyo-ku, Kyoto, Japan.
Graduate School of Data Science, Shiga University, Otsu, Shiga, Japan.

Yoshinori Matsuoka (Y)

Department of Healthcare Epidemiology, Kyoto University Graduate School of Medicine/Public Health, Sakyo-ku, Kyoto, Japan.
Department of Emergency Medicine, Kobe City Medical Center General Hospital, Kobe City, Hyogo, Japan.

Junichi Matsumoto (J)

Department of Emergency and Critical Care Medicine, St. Marianna University School of Medicine, Kawasaki, Kanagawa, Japan.

Junji Kumasawa (J)

Human Health Sciences, Kyoto University Graduate School of Medicine, Sakyo-ku, Kyoto, Japan.
Department of Critical Care Medicine, Sakai City Medical Center, Sakai, Osaka, Japan.

Kentaro Tochitatni (K)

Department of Infectious Diseases, Kyoto City Hospital, Nakagyo-ku, Kyoto, Japan.

Hiraku Funakoshi (H)

Department of Emergency and Critical Care Medicine, Tokyobay Urayasu Ichikawa Medical Center, Urayasu, Chiba, Japan.

Tomohiro Hosoda (T)

Department of Infectious Disease, Kawasaki Municipal Kawasaki Hospital, Kawasaki, Kanagawa, Japan.

Aiko Kugimiya (A)

Department of Emergency and Critical Care Medicine, Yamanashi Prefectural Central Hospital, Kofu, Yamanashi, Japan.

Michinori Shirano (M)

Department of Infectious Diseases, Osaka City General Hospital, Miyakojima-ku, Osaka, Japan.

Fumiko Hamabe (F)

Department of Radiology, National Defense Medical College Hospital, Tokorozawa, Saitama, Japan.

Sachiyo Iwata (S)

Division of Cardiovascular Medicine, Hyogo Prefectural Kakogawa Medical Center, Kanno-cho, Kakogawa, Japan.

Shingo Fukuma (S)

Human Health Sciences, Kyoto University Graduate School of Medicine, Sakyo-ku, Kyoto, Japan.

Classifications MeSH