Structure of the Shaker Kv channel and mechanism of slow C-type inactivation.


Journal

Science advances
ISSN: 2375-2548
Titre abrégé: Sci Adv
Pays: United States
ID NLM: 101653440

Informations de publication

Date de publication:
18 Mar 2022
Historique:
entrez: 18 3 2022
pubmed: 19 3 2022
medline: 19 3 2022
Statut: ppublish

Résumé

Voltage-activated potassium (Kv) channels open upon membrane depolarization and proceed to spontaneously inactivate. Inactivation controls neuronal firing rates and serves as a form of short-term memory and is implicated in various human neurological disorders. Here, we use high-resolution cryo-electron microscopy and computer simulations to determine one of the molecular mechanisms underlying this physiologically crucial process. Structures of the activated Shaker Kv channel and of its W434F mutant in lipid bilayers demonstrate that C-type inactivation entails the dilation of the ion selectivity filter and the repositioning of neighboring residues known to be functionally critical. Microsecond-scale molecular dynamics trajectories confirm that these changes inhibit rapid ion permeation through the channel. This long-sought breakthrough establishes how eukaryotic K

Identifiants

pubmed: 35302848
doi: 10.1126/sciadv.abm7814
pmc: PMC8932672
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

eabm7814

Références

J Gen Physiol. 2020 Jun 1;152(6):
pubmed: 32110806
J Gen Physiol. 1997 Nov;110(5):579-89
pubmed: 9348329
Science. 2012 Apr 13;336(6078):229-33
pubmed: 22499946
Biophys J. 1993 Nov;65(5):2089-96
pubmed: 8298038
Neuron. 2000 Sep;27(3):573-83
pubmed: 11055439
Recept Channels. 1993;1(1):61-71
pubmed: 8081712
Nature. 2007 Nov 15;450(7168):370-5
pubmed: 18004375
Neuron. 1997 Jul;19(1):175-84
pubmed: 9247273
Elife. 2013 Dec 10;2:e01289
pubmed: 24327560
Proc Natl Acad Sci U S A. 2016 Jun 21;113(25):6991-6
pubmed: 27298368
Elife. 2018 Aug 15;7:
pubmed: 30109985
J Gen Physiol. 2013 Feb;141(2):151-60
pubmed: 23319730
J Chem Theory Comput. 2008 May;4(5):819-34
pubmed: 26621095
J Gen Physiol. 1997 Nov;110(5):539-50
pubmed: 9348326
J Mol Graph. 1996 Dec;14(6):354-60, 376
pubmed: 9195488
J Gen Physiol. 1997 Jun;109(6):779-89
pubmed: 9222903
Biophys J. 1994 Apr;66(4):1068-75
pubmed: 8038379
J Gen Physiol. 2018 Jul 2;150(7):911-932
pubmed: 29941430
J Gen Physiol. 2000 Aug;116(2):181-90
pubmed: 10919865
Proc Natl Acad Sci U S A. 1991 Jun 15;88(12):5092-5
pubmed: 2052588
J Gen Physiol. 2014 Sep;144(3):221-30
pubmed: 25156116
Neuron. 1996 Apr;16(4):859-67
pubmed: 8608004
J Comput Chem. 2004 Oct;25(13):1605-12
pubmed: 15264254
Neuron. 1996 Jun;16(6):1169-77
pubmed: 8663993
Proc Natl Acad Sci U S A. 2018 May 22;115(21):5426-5431
pubmed: 29735651
J Struct Biol. 2015 Nov;192(2):216-21
pubmed: 26278980
Nat Methods. 2017 Mar;14(3):290-296
pubmed: 28165473
BMC Bioinformatics. 2008 Dec 12;9:531
pubmed: 19077267
Bioinformatics. 2013 Apr 1;29(7):845-54
pubmed: 23407358
Nature. 2008 Dec 18;456(7224):891-7
pubmed: 19092925
J Gen Physiol. 1998 Oct;112(4):377-89
pubmed: 9758858
Neuron. 1996 Jun;16(6):1159-67
pubmed: 8663992
Prog Biophys Mol Biol. 2006 Oct;92(2):185-208
pubmed: 16316679
Phys Rev A Gen Phys. 1985 Mar;31(3):1695-1697
pubmed: 9895674
Neuron. 1995 Oct;15(4):951-60
pubmed: 7576643
Nature. 2010 Jul 8;466(7303):203-8
pubmed: 20613835
J Gen Physiol. 1999 Feb;113(2):347-58
pubmed: 9925829
EMBO J. 2011 Jul 15;30(17):3594-606
pubmed: 21765396
J Mol Biol. 2021 Aug 20;433(17):167002
pubmed: 33891905
J Chem Phys. 2020 Jul 28;153(4):044130
pubmed: 32752662
Elife. 2017 Nov 22;6:
pubmed: 29165243
J Chem Phys. 2005 Feb 1;122(5):54101
pubmed: 15740304
Nature. 1996 Feb 29;379(6568):833-6
pubmed: 8587608
FEBS Lett. 1996 Jun 10;388(1):59-65
pubmed: 8654591
Sci Adv. 2020 Oct 30;6(44):
pubmed: 33127683
J Physiol. 2012 Jun 1;590(11):2591-9
pubmed: 22431339
Neuron. 2001 Nov 20;32(4):635-48
pubmed: 11719204
J Comput Chem. 2009 Jul 30;30(10):1545-614
pubmed: 19444816
J Physiol. 1997 Mar 1;499 ( Pt 2):361-7
pubmed: 9080366
Physiol Rev. 2005 Oct;85(4):1205-53
pubmed: 16183911
Neuron. 1993 Aug;11(2):353-8
pubmed: 8352943
Neuron. 1991 Nov;7(5):743-53
pubmed: 1742023
Neuron. 1995 Dec;15(6):1449-54
pubmed: 8845167
Proc Natl Acad Sci U S A. 2019 Mar 5;116(10):4244-4249
pubmed: 30760596
Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):486-501
pubmed: 20383002
J Gen Physiol. 2021 Sep 6;153(9):
pubmed: 34357375
J Chem Theory Comput. 2014 Feb 11;10(2):676-90
pubmed: 26580045
J Struct Biol. 2005 Oct;152(1):36-51
pubmed: 16182563
Q Rev Biophys. 1998 Aug;31(3):239-95
pubmed: 10384687
J Gen Physiol. 1998 Aug;112(2):243-57
pubmed: 9689030
Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):213-21
pubmed: 20124702
J Chem Theory Comput. 2015 May 12;11(5):2144-55
pubmed: 26574417
Nature. 2010 Jul 8;466(7303):272-5
pubmed: 20613845
Elife. 2018 Nov 09;7:
pubmed: 30412051
Nature. 2002 Sep 5;419(6902):35-42
pubmed: 12214225
Science. 1990 Oct 26;250(4980):533-8
pubmed: 2122519
Nature. 2001 Nov 1;414(6859):43-8
pubmed: 11689936
Nat Struct Mol Biol. 2017 Oct;24(10):857-865
pubmed: 28846092
Neuron. 2006 Nov 22;52(4):623-34
pubmed: 17114047
Proteins. 1996 Apr;24(4):433-8
pubmed: 9162944
J Phys Chem B. 2010 Jun 17;114(23):7830-43
pubmed: 20496934
Nature. 2006 Mar 23;440(7083):463-9
pubmed: 16554806
Science. 1990 Oct 26;250(4980):568-71
pubmed: 2122520
J Chem Theory Comput. 2012 Sep 11;8(9):3257-3273
pubmed: 23341755
Cell. 2001 Feb 23;104(4):569-80
pubmed: 11239413
Biophys J. 2011 May 18;100(10):2387-93
pubmed: 21575572
J Gen Physiol. 2013 May;141(5):619-32
pubmed: 23589581
Nat Methods. 2017 Apr;14(4):331-332
pubmed: 28250466
Hum Mol Genet. 2002 Oct 1;11(20):2435-45
pubmed: 12351579
Nature. 2007 Nov 15;450(7168):376-82
pubmed: 18004376
Neuron. 1991 Oct;7(4):547-56
pubmed: 1931050
Nat Protoc. 2014 Nov;9(11):2574-85
pubmed: 25299155
Nat Methods. 2017 Jan;14(1):71-73
pubmed: 27819658
Nature. 2001 Nov 1;414(6859):37-42
pubmed: 11689935
Neuron. 2003 Apr 10;38(1):61-7
pubmed: 12691664
Nat Rev Mol Cell Biol. 2008 Apr;9(4):323-32
pubmed: 18354422
Science. 2010 Apr 2;328(5974):67-73
pubmed: 20360102
J Chem Theory Comput. 2013 Jan 8;9(1):687-97
pubmed: 26589065
Biochemistry. 2018 Dec 11;57(49):6741-6751
pubmed: 30481009
J Phys Chem B. 2007 Jul 12;111(27):7812-24
pubmed: 17569554

Auteurs

Xiao-Feng Tan (XF)

Molecular Physiology and Biophysics Section, Porter Neuroscience Research Center, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD 20892, USA.

Chanhyung Bae (C)

Molecular Physiology and Biophysics Section, Porter Neuroscience Research Center, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD 20892, USA.

Robyn Stix (R)

Theoretical Molecular Biophysics Laboratory, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, MD 20892, USA.
Department of Biology, Johns Hopkins University, 3400 N. Charles Street, Baltimore, MD 21218, USA.

Ana I Fernández-Mariño (AI)

Molecular Physiology and Biophysics Section, Porter Neuroscience Research Center, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD 20892, USA.

Kate Huffer (K)

Molecular Physiology and Biophysics Section, Porter Neuroscience Research Center, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD 20892, USA.
Department of Biology, Johns Hopkins University, 3400 N. Charles Street, Baltimore, MD 21218, USA.

Tsg-Hui Chang (TH)

Molecular Physiology and Biophysics Section, Porter Neuroscience Research Center, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD 20892, USA.

Jiansen Jiang (J)

Laboratory of Membrane Proteins and Structural Biology and Biophysics Center, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD 20892, USA.

José D Faraldo-Gómez (JD)

Theoretical Molecular Biophysics Laboratory, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, MD 20892, USA.

Kenton J Swartz (KJ)

Molecular Physiology and Biophysics Section, Porter Neuroscience Research Center, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD 20892, USA.

Classifications MeSH