Browsing Multiple Subjects When the Atlas Adaptation Cannot Be Achieved

3D brain atlas inter-subject parcellation atlas structural approach visualization

Journal

Frontiers in neuroinformatics
ISSN: 1662-5196
Titre abrégé: Front Neuroinform
Pays: Switzerland
ID NLM: 101477957

Informations de publication

Date de publication:
2022
Historique:
received: 28 10 2021
accepted: 17 01 2022
entrez: 21 3 2022
pubmed: 22 3 2022
medline: 22 3 2022
Statut: epublish

Résumé

Brain mapping studies often need to identify brain structures or functional circuits into a set of individual brains. To this end, multiple atlases have been published to represent such structures based on different modalities, subject sets, and techniques. The mainstream approach to exploit these atlases consists in spatially deforming each individual data onto a given atlas using dense deformation fields, which supposes the existence of a continuous mapping between atlases and individuals. However, this continuity is not always verified, and this "iconic" approach has limits. We present in this study an alternative, complementary, "structural" approach, which consists in extracting structures from the individual data, and comparing them without deformation. A "structural atlas" is thus a collection of annotated individual data with a common structure nomenclature. It may be used to characterize structure shape variability across individuals or species, or to train machine learning systems. This study exhibits

Identifiants

pubmed: 35311005
doi: 10.3389/fninf.2022.803934
pmc: PMC8928460
doi:

Types de publication

Journal Article

Langues

eng

Pagination

803934

Informations de copyright

Copyright © 2022 Rivière, Leprince, Labra, Vindas, Foubet, Cagna, Loh, Hopkins, Balzeau, Mancip, Lebenberg, Cointepas, Coulon and Mangin.

Déclaration de conflit d'intérêts

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

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Auteurs

Denis Rivière (D)

Université Paris-Saclay, CEA, CNRS UMR 9027, Baobab, NeuroSpin, Gif-sur-Yvette, France.

Yann Leprince (Y)

Université Paris-Saclay, CEA, CNRS UMR 9027, Baobab, NeuroSpin, Gif-sur-Yvette, France.

Nicole Labra (N)

Université Paris-Saclay, CEA, CNRS UMR 9027, Baobab, NeuroSpin, Gif-sur-Yvette, France.
PaleoFED Team, UMR 7194, CNRS, Département Homme et Environnement, Muséum National d'Histoire Naturelle, Musée de l'Homme, Paris, France.

Nabil Vindas (N)

Université Paris-Saclay, CEA, CNRS UMR 9027, Baobab, NeuroSpin, Gif-sur-Yvette, France.

Ophélie Foubet (O)

Université Paris-Saclay, CEA, CNRS UMR 9027, Baobab, NeuroSpin, Gif-sur-Yvette, France.

Bastien Cagna (B)

Université Paris-Saclay, CEA, CNRS UMR 9027, Baobab, NeuroSpin, Gif-sur-Yvette, France.

Kep Kee Loh (KK)

INT - Institut de Neurosciences de la Timone, Aix-Marseille Univ, CNRS UMR 7289, Marseille, France.

William Hopkins (W)

Department of Comparative Medicine, University of Texas MD Anderson Cancer Center, Bastrop, TX, United States.

Antoine Balzeau (A)

PaleoFED Team, UMR 7194, CNRS, Département Homme et Environnement, Muséum National d'Histoire Naturelle, Musée de l'Homme, Paris, France.
Department of African Zoology, Royal Museum for Central Africa, Tervuren, Belgium.

Martial Mancip (M)

Maison de la Simulation, CNRS, CEA Saclay, Gif-sur-Yvette, France.

Jessica Lebenberg (J)

Université Paris-Saclay, CEA, CNRS UMR 9027, Baobab, NeuroSpin, Gif-sur-Yvette, France.
Université de Paris, INSERM UMR 1141, NeuroDiderot, Paris, France.

Yann Cointepas (Y)

Université Paris-Saclay, CEA, CNRS UMR 9027, Baobab, NeuroSpin, Gif-sur-Yvette, France.

Olivier Coulon (O)

INT - Institut de Neurosciences de la Timone, Aix-Marseille Univ, CNRS UMR 7289, Marseille, France.

Jean-François Mangin (JF)

Université Paris-Saclay, CEA, CNRS UMR 9027, Baobab, NeuroSpin, Gif-sur-Yvette, France.

Classifications MeSH