Boosting targeted genome editing using the hei-tag.

CRISPR Cas Oryzias latipes base editing genetics genomics mouse nuclear localization oryzias latipes targeted genome editing zebrafish

Journal

eLife
ISSN: 2050-084X
Titre abrégé: Elife
Pays: England
ID NLM: 101579614

Informations de publication

Date de publication:
25 03 2022
Historique:
received: 22 05 2021
accepted: 15 03 2022
pubmed: 26 3 2022
medline: 7 5 2022
entrez: 25 3 2022
Statut: epublish

Résumé

Precise, targeted genome editing by CRISPR/Cas9 is key for basic research and translational approaches in model and non-model systems. While active in all species tested so far, editing efficiencies still leave room for improvement. The bacterial Cas9 needs to be efficiently shuttled into the nucleus as attempted by fusion with nuclear localization signals (NLSs). Additional peptide tags such as FLAG- or myc-tags are usually added for immediate detection or straightforward purification. Immediate activity is usually granted by administration of preassembled protein/RNA complexes. We present the 'hei-tag ( The genetic code stored within DNA provides cells with the instructions they need to carry out their role in the body. Any changes to these genes, or the DNA sequence around them, has the potential to completely alter how a cell behaves. Scientists have developed various tools that allow them to experimentally modify the genome of cells or even entire living organisms. This includes the popular Cas9 enzyme which cuts DNA at specific sites, and base editors which can precisely change bits of genetic code without cutting DNA. While there are lots of Cas9 enzymes and base editors currently available, these often differ greatly in their activity depending on which cell type or organism they are applied to. Finding a tool that can effectively modify the genome of an organism at the right time during development also poses a challenge. All the cells in an organism arise from a single fertilized cell. If this cell is genetically edited, all its subsequent daughter cells (which make up the entire organism) will contain the genetic modification. However, most genome editing tools only work efficiently later in development, resulting in an undesirable mosaic organism composed of both edited and non-edited cells. Here, Thumberger et al. have developed a new ‘high efficiency-tag’ (also known as hei-tag for short) that can enhance the activity of gene editing tools and overcome this barrier. The tag improves the efficiency of gene editing by immediately shuttling a Cas9 enzyme to the nucleus, the cellular compartment that stores DNA. In all cases, gene editing tools with hei-tag worked better than those without in fish embryos and mouse cells grown in the laboratory. When Cas9 enzymes connected to a hei-tag were injected into the first fertilized cell of a fish embryo, this resulted in an even distribution of edited genes spread throughout the whole organism. To understand how a gene affects an organism, researchers need to be able to edit it as early in development as possible. Attaching the ‘hei-tag’ to already available tools could help boost their activity and make them more efficient. It could also allow advances in medical research aimed at replacing faulty genes with fully functioning ones.

Autres résumés

Type: plain-language-summary (eng)
The genetic code stored within DNA provides cells with the instructions they need to carry out their role in the body. Any changes to these genes, or the DNA sequence around them, has the potential to completely alter how a cell behaves. Scientists have developed various tools that allow them to experimentally modify the genome of cells or even entire living organisms. This includes the popular Cas9 enzyme which cuts DNA at specific sites, and base editors which can precisely change bits of genetic code without cutting DNA. While there are lots of Cas9 enzymes and base editors currently available, these often differ greatly in their activity depending on which cell type or organism they are applied to. Finding a tool that can effectively modify the genome of an organism at the right time during development also poses a challenge. All the cells in an organism arise from a single fertilized cell. If this cell is genetically edited, all its subsequent daughter cells (which make up the entire organism) will contain the genetic modification. However, most genome editing tools only work efficiently later in development, resulting in an undesirable mosaic organism composed of both edited and non-edited cells. Here, Thumberger et al. have developed a new ‘high efficiency-tag’ (also known as hei-tag for short) that can enhance the activity of gene editing tools and overcome this barrier. The tag improves the efficiency of gene editing by immediately shuttling a Cas9 enzyme to the nucleus, the cellular compartment that stores DNA. In all cases, gene editing tools with hei-tag worked better than those without in fish embryos and mouse cells grown in the laboratory. When Cas9 enzymes connected to a hei-tag were injected into the first fertilized cell of a fish embryo, this resulted in an even distribution of edited genes spread throughout the whole organism. To understand how a gene affects an organism, researchers need to be able to edit it as early in development as possible. Attaching the ‘hei-tag’ to already available tools could help boost their activity and make them more efficient. It could also allow advances in medical research aimed at replacing faulty genes with fully functioning ones.

Identifiants

pubmed: 35333175
doi: 10.7554/eLife.70558
pii: 70558
pmc: PMC9068219
doi:
pii:

Substances chimiques

Nuclear Localization Signals 0
RNA, Messenger 0
Cytosine 8J337D1HZY

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Informations de copyright

© 2022, Thumberger et al.

Déclaration de conflit d'intérêts

TT, TT, JG, JW patent application pending (EP21166099.8) related to the findings described, AC, RM, BW, MF No competing interests declared

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Auteurs

Thomas Thumberger (T)

Centre for Organismal Studies (COS), Heidelberg University, Heidelberg, Germany.

Tinatini Tavhelidse-Suck (T)

Centre for Organismal Studies (COS), Heidelberg University, Heidelberg, Germany.
Heidelberg Biosciences International Graduate School (HBIGS), Heidelberg, Germany.

Jose Arturo Gutierrez-Triana (JA)

Centre for Organismal Studies (COS), Heidelberg University, Heidelberg, Germany.

Alex Cornean (A)

Centre for Organismal Studies (COS), Heidelberg University, Heidelberg, Germany.
Heidelberg Biosciences International Graduate School (HBIGS), Heidelberg, Germany.

Rebekka Medert (R)

Heidelberg Biosciences International Graduate School (HBIGS), Heidelberg, Germany.
Institute of Pharmacology, Heidelberg University, Heidelberg, Germany.
DZHK (German Centre for Cardiovascular Research), partner site Heidelberg/Mannheim, Heidelberg, Germany.

Bettina Welz (B)

Centre for Organismal Studies (COS), Heidelberg University, Heidelberg, Germany.
Heidelberg Biosciences International Graduate School (HBIGS), Heidelberg, Germany.
DZHK (German Centre for Cardiovascular Research), partner site Heidelberg/Mannheim, Heidelberg, Germany.

Marc Freichel (M)

Institute of Pharmacology, Heidelberg University, Heidelberg, Germany.
DZHK (German Centre for Cardiovascular Research), partner site Heidelberg/Mannheim, Heidelberg, Germany.

Joachim Wittbrodt (J)

Centre for Organismal Studies (COS), Heidelberg University, Heidelberg, Germany.
DZHK (German Centre for Cardiovascular Research), partner site Heidelberg/Mannheim, Heidelberg, Germany.

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Classifications MeSH