Maternal Relationships among Ancient and Modern Southern African Sheep: Newly Discovered Mitochondrial Haplogroups.

Later Stone Age ancient DNA archaeology mitochondrial genome sheep southern Africa

Journal

Biology
ISSN: 2079-7737
Titre abrégé: Biology (Basel)
Pays: Switzerland
ID NLM: 101587988

Informations de publication

Date de publication:
11 Mar 2022
Historique:
received: 28 01 2022
revised: 27 02 2022
accepted: 09 03 2022
entrez: 26 3 2022
pubmed: 27 3 2022
medline: 27 3 2022
Statut: epublish

Résumé

We investigated the genetic diversity and historic relationships among southern African sheep as well as the relationships between them and sheep outside the continent by sourcing both archaeological and modern sheep samples. Archaeological sheep samples derived from the site Die Kelders 1, near Cape Town, date to approximately 1500 years ago. The modern samples were taken as ear snips from Damara, Namaqua Afrikaner, and Ronderib Afrikaner sheep on a farm in Prieska in the Northern Cape. Illumina sequencing libraries were constructed for both ancient and modern specimens. Ancient specimens were enriched for the mitochondrial genome using an in-solution hybridization protocol and modern specimens were subjected to shotgun sequencing. Sequences were mapped to the

Identifiants

pubmed: 35336803
pii: biology11030428
doi: 10.3390/biology11030428
pmc: PMC8944976
pii:
doi:

Types de publication

Journal Article

Langues

eng

Subventions

Organisme : Fry Undergraduate Award, Southern Methodist University
ID : N/A
Organisme : University of Otago Research Grant
ID : N/A

Références

BMC Res Notes. 2012 Jul 02;5:337
pubmed: 22748135
J Hered. 2005 Sep-Oct;96(5):494-501
pubmed: 16135704
BMC Genet. 2012 Feb 26;13:10
pubmed: 22364287
Heredity (Edinb). 2011 Apr;106(4):700-6
pubmed: 20940734
Mol Biol Evol. 2017 Sep 1;34(9):2422-2424
pubmed: 28472384
Vet Parasitol. 2021 Mar;291:109384
pubmed: 33657515
Sci Rep. 2020 Sep 2;10(1):14427
pubmed: 32879376
Bioinformatics. 2009 Jul 15;25(14):1754-60
pubmed: 19451168
PLoS One. 2013 Dec 11;8(12):e81952
pubmed: 24349158
Afr Archaeol Rev. 2013;30:97-114
pubmed: 27212780
PLoS One. 2013 Aug 19;8(8):e71956
pubmed: 23977187
Mol Biol Evol. 2015 Oct;32(10):2515-33
pubmed: 26085518
Trop Anim Health Prod. 2011 Oct;43(7):1459-64
pubmed: 21725705
J Genet Eng Biotechnol. 2015 Jun;13(1):79-86
pubmed: 30647570
PLoS One. 2015 Aug 21;10(8):e0134215
pubmed: 26295347
Trop Anim Health Prod. 2020 Nov;52(6):3933
pubmed: 33094422
Anim Genet. 2005 Aug;36(4):331-6
pubmed: 16026344
J Hum Evol. 2000 Jan;38(1):169-95
pubmed: 10627402
Trop Anim Health Prod. 2019 Jul;51(6):1393-1404
pubmed: 30798433
J Mol Evol. 1998 Oct;47(4):441-8
pubmed: 9767689
Mol Biol Evol. 2006 Sep;23(9):1776-83
pubmed: 16782761
Anim Genet. 1996 Feb;27(1):25-33
pubmed: 8624033
Anim Genet. 2013 Jun;44(3):344-7
pubmed: 23020288
Sci Rep. 2021 Mar 23;11(1):6631
pubmed: 33758223
Bioinformatics. 2013 Jul 01;29(13):1682-4
pubmed: 23613487
Anim Genet. 1999 Jun;30(3):211-3
pubmed: 10442985
Trop Anim Health Prod. 2011 Oct;43(7):1427-41
pubmed: 21509451
J Hered. 1998 Mar-Apr;89(2):113-20
pubmed: 9542158
Genet Sel Evol. 2007 Jan-Feb;39(1):91-103
pubmed: 17212950
J Hum Evol. 2000 Jan;38(1):43-90
pubmed: 10627397
Proc Biol Sci. 2005 Oct 22;272(1577):2211-7
pubmed: 16191632
Biology (Basel). 2020 Sep 30;9(10):
pubmed: 33007831
Proc Biol Sci. 2002 May 7;269(1494):893-904
pubmed: 12028771
Anim Genet. 2016 Jun;47(3):377-81
pubmed: 26765790
Sci Rep. 2020 Jun 23;10(1):10225
pubmed: 32576960
Nature. 2015 Jun 11;522(7555):167-72
pubmed: 26062507
PLoS One. 2018 Jun 14;13(6):e0198941
pubmed: 29902271
PLoS One. 2012;7(6):e38601
pubmed: 22685589
Syst Biol. 2010 May;59(3):307-21
pubmed: 20525638

Auteurs

K Ann Horsburgh (KA)

Department of Anthropology, Southern Methodist University, Dallas, TX 75275, USA.
School of Geography, Archaeology and Environmental Studies, University of the Witwatersrand, Wits 2050, South Africa.

Devri B Beckett (DB)

Department of Anthropology, University of Colorado, Denver, CO 80217, USA.

Anna L Gosling (AL)

Department of Anatomy, University of Otago, Dunedin 9016, New Zealand.

Classifications MeSH