Deep Insights into the Specific Evolution of Fungal Hybrid B Heme Peroxidases.

ancestral sequence reconstruction enzymatic antioxidant hybrid B heme peroxidase oxidative stress peroxidase–catalase superfamily

Journal

Biology
ISSN: 2079-7737
Titre abrégé: Biology (Basel)
Pays: Switzerland
ID NLM: 101587988

Informations de publication

Date de publication:
17 Mar 2022
Historique:
received: 04 02 2022
revised: 08 03 2022
accepted: 14 03 2022
entrez: 26 3 2022
pubmed: 27 3 2022
medline: 27 3 2022
Statut: epublish

Résumé

In this study, we focus on a detailed bioinformatics analysis of

Identifiants

pubmed: 35336832
pii: biology11030459
doi: 10.3390/biology11030459
pmc: PMC8945051
pii:
doi:

Types de publication

Journal Article

Langues

eng

Subventions

Organisme : Austrian Science Fund FWF
ID : P 31707
Pays : Austria

Références

Mol Biol Evol. 2018 Jun 1;35(6):1547-1549
pubmed: 29722887
J Biol Chem. 2001 Nov 2;276(44):40704-11
pubmed: 11546788
Nat Biotechnol. 2022 Jan 3;:
pubmed: 34980915
J Chem Inf Model. 2021 Aug 23;61(8):3891-3898
pubmed: 34278794
PLoS Comput Biol. 2012;8(10):e1002708
pubmed: 23093919
Genome Biol Evol. 2020 Dec 6;12(12):2491-2507
pubmed: 33283866
PLoS One. 2015 Oct 23;10(10):e0140984
pubmed: 26496708
Proc Natl Acad Sci U S A. 1997 Dec 9;94(25):13804-9
pubmed: 9391108
Antioxidants (Basel). 2020 Jul 23;9(8):
pubmed: 32718101
Nat Protoc. 2016 Dec;11(12):2301-2319
pubmed: 27809316
Proc Natl Acad Sci U S A. 2012 Oct 23;109(43):17501-6
pubmed: 23045686
Nat Methods. 2016 Sep;13(9):731-40
pubmed: 27348712
PLoS One. 2012;7(1):e29943
pubmed: 22253834
Antioxidants (Basel). 2020 Nov 26;9(12):
pubmed: 33256101
Antioxidants (Basel). 2021 Sep 12;10(9):
pubmed: 34573078
Int J Mol Sci. 2021 Jun 02;22(11):
pubmed: 34199590
Arch Biochem Biophys. 2015 May 15;574:108-19
pubmed: 25575902
Bioinformatics. 2014 May 1;30(9):1312-3
pubmed: 24451623
Mol Biol Evol. 2010 Sep;27(9):1988-99
pubmed: 20368266
Nucleic Acids Res. 2016 Jul 8;44(W1):W406-9
pubmed: 27131371
Arch Biochem Biophys. 2010 Aug 1;500(1):66-73
pubmed: 20346907
Free Radic Biol Med. 2021 Aug 20;172:264-272
pubmed: 34129927
BMC Biol. 2021 Nov 24;19(1):251
pubmed: 34819072
Mol Biol Evol. 2007 Aug;24(8):1586-91
pubmed: 17483113
Nature. 2021 Aug;596(7873):583-589
pubmed: 34265844
Plant Dis. 2007 Feb;91(2):204-208
pubmed: 30781005
Sci Rep. 2017 Aug 24;7(1):9393
pubmed: 28839281
Mol Biol Evol. 2001 May;18(5):691-9
pubmed: 11319253
Mol Biol Evol. 2015 Jan;32(1):268-74
pubmed: 25371430
Methods Enzymol. 2014;541:3-10
pubmed: 24674058
Biotechnol Biofuels. 2017 Mar 16;10:67
pubmed: 28331543
J Biol Chem. 2012 Sep 14;287(38):32254-62
pubmed: 22822072
Genome Biol Evol. 2015 May 14;7(6):1590-601
pubmed: 25977457
J Biol Chem. 2011 Jul 15;286(28):24608-15
pubmed: 21566139
Nucleic Acids Res. 2004 Mar 19;32(5):1792-7
pubmed: 15034147
Genome Biol Evol. 2014 Jun 12;6(7):1564-78
pubmed: 24923322
Brief Bioinform. 2021 Jul 20;22(4):
pubmed: 33346815
Protein Eng Des Sel. 2015 Jul;28(7):221-30
pubmed: 25858964
Chemistry. 2019 Feb 21;25(11):2708-2712
pubmed: 30566756
Biochem J. 2005 Sep 1;390(Pt 2):465-74
pubmed: 15850459

Auteurs

Marcel Zámocký (M)

Laboratory for Phylogenomic Ecology, Institute of Molecular Biology, Slovak Academy of Sciences, Dúbravská cesta 21, SK-84551 Bratislava, Slovakia.
University of Natural Resources and Life Sciences, Vienna, Department of Chemistry, Institute of Biochemistry, Muthgasse 18, 1190 Vienna, Austria.

Miloš Musil (M)

Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, CZ-61137 Brno, Czech Republic.
International Clinical Research Centre, St. Anne's University Hospital Brno, CZ-65691 Brno, Czech Republic.
Department of Information Systems, Faculty of Information Technology, Brno University of Technology, CZ-61200 Brno, Czech Republic.

Maksym Danchenko (M)

Department of Glycobiology, Institute of Chemistry, Slovak Academy of Sciences, Dúbravská cesta 9, SK-84538 Bratislava, Slovakia.

Peter Ferianc (P)

Laboratory for Phylogenomic Ecology, Institute of Molecular Biology, Slovak Academy of Sciences, Dúbravská cesta 21, SK-84551 Bratislava, Slovakia.

Katarína Chovanová (K)

Laboratory for Phylogenomic Ecology, Institute of Molecular Biology, Slovak Academy of Sciences, Dúbravská cesta 21, SK-84551 Bratislava, Slovakia.

Peter Baráth (P)

Department of Glycobiology, Institute of Chemistry, Slovak Academy of Sciences, Dúbravská cesta 9, SK-84538 Bratislava, Slovakia.

Andrej Poljovka (A)

Laboratory for Phylogenomic Ecology, Institute of Molecular Biology, Slovak Academy of Sciences, Dúbravská cesta 21, SK-84551 Bratislava, Slovakia.

David Bednář (D)

Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, CZ-61137 Brno, Czech Republic.
International Clinical Research Centre, St. Anne's University Hospital Brno, CZ-65691 Brno, Czech Republic.

Classifications MeSH