Transport features predict if a molecule is odorous.
machine learning
odor space
olfaction
physical transport
Journal
Proceedings of the National Academy of Sciences of the United States of America
ISSN: 1091-6490
Titre abrégé: Proc Natl Acad Sci U S A
Pays: United States
ID NLM: 7505876
Informations de publication
Date de publication:
12 04 2022
12 04 2022
Historique:
entrez:
4
4
2022
pubmed:
5
4
2022
medline:
16
4
2022
Statut:
ppublish
Résumé
In studies of vision and audition, stimuli can be chosen to span the visible or audible spectrum; in olfaction, the axes and boundaries defining the analogous odorous space are unknown. As a result, the population of olfactory space is likewise unknown, and anecdotal estimates of 10,000 odorants have endured. The journey a molecule must take to reach olfactory receptors (ORs) and produce an odor percept suggests some chemical criteria for odorants: a molecule must 1) be volatile enough to enter the air phase, 2) be nonvolatile and hydrophilic enough to sorb into the mucous layer coating the olfactory epithelium, 3) be hydrophobic enough to enter an OR binding pocket, and 4) activate at least one OR. Here, we develop a simple and interpretable quantitative model that reliably predicts whether a molecule is odorous or odorless based solely on the first three criteria. Applying our model to a database of all possible small organic molecules, we estimate that at least 40 billion possible compounds are odorous, six orders of magnitude larger than current estimates of 10,000. With this model in hand, we can define the boundaries of olfactory space in terms of molecular volatility and hydrophobicity, enabling representative sampling of olfactory stimulus space.
Identifiants
pubmed: 35377807
doi: 10.1073/pnas.2116576119
pmc: PMC9169660
doi:
Substances chimiques
Receptors, Odorant
0
Volatile Organic Compounds
0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
e2116576119Subventions
Organisme : HHS | NIH | National Institute on Deafness and Other Communication Disorders (NIDCD)
ID : R01DC013339
Organisme : HHS | NIH | National Institute on Deafness and Other Communication Disorders (NIDCD)
ID : T32DC000014
Organisme : HHS | NIH | National Institute on Deafness and Other Communication Disorders (NIDCD)
ID : R01DC018455
Organisme : HHS | NIH | National Institute of Neurological Disorders and Stroke (NINDS)
ID : U19NS112953
Organisme : HHS | NIH | National Institute on Deafness and Other Communication Disorders (NIDCD)
ID : R01DC017757
Organisme : HHS | NIH | National Institute on Deafness and Other Communication Disorders (NIDCD)
ID : F32DC019030
Organisme : NIDCD NIH HHS
ID : R01 DC017757
Pays : United States
Organisme : NIDCD NIH HHS
ID : T32 DC000014
Pays : United States
Organisme : NIDCD NIH HHS
ID : F32 DC019030
Pays : United States
Organisme : NIDCD NIH HHS
ID : R01 DC018455
Pays : United States
Organisme : NINDS NIH HHS
ID : U19 NS112953
Pays : United States
Organisme : NIDCD NIH HHS
ID : R01 DC013339
Pays : United States
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