Infectious viral load in unvaccinated and vaccinated individuals infected with ancestral, Delta or Omicron SARS-CoV-2.


Journal

Nature medicine
ISSN: 1546-170X
Titre abrégé: Nat Med
Pays: United States
ID NLM: 9502015

Informations de publication

Date de publication:
07 2022
Historique:
received: 24 01 2022
accepted: 06 04 2022
pubmed: 9 4 2022
medline: 27 7 2022
entrez: 8 4 2022
Statut: ppublish

Résumé

Infectious viral load (VL) expelled as droplets and aerosols by infected individuals partly determines transmission of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). RNA VL measured by qRT-PCR is only a weak proxy for infectiousness. Studies on the kinetics of infectious VL are important to understand the mechanisms behind the different transmissibility of SARS-CoV-2 variants and the effect of vaccination on transmission, which allows guidance of public health measures. In this study, we quantified infectious VL in individuals infected with SARS-CoV-2 during the first five symptomatic days by in vitro culturability assay in unvaccinated or vaccinated individuals infected with pre-variant of concern (pre-VOC) SARS-CoV-2, Delta or Omicron BA.1. Unvaccinated individuals infected with pre-VOC SARS-CoV-2 had lower infectious VL than Delta-infected unvaccinated individuals. Full vaccination (defined as >2 weeks after receipt of the second dose during the primary vaccination series) significantly reduced infectious VL for Delta breakthrough cases compared to unvaccinated individuals. For Omicron BA.1 breakthrough cases, reduced infectious VL was observed only in boosted but not in fully vaccinated individuals compared to unvaccinated individuals. In addition, infectious VL was lower in fully vaccinated Omicron BA.1-infected individuals compared to fully vaccinated Delta-infected individuals, suggesting that mechanisms other than increased infectious VL contribute to the high infectiousness of SARS-CoV-2 Omicron BA.1. Our findings indicate that vaccines may lower transmission risk and, therefore, have a public health benefit beyond the individual protection from severe disease.

Identifiants

pubmed: 35395151
doi: 10.1038/s41591-022-01816-0
pii: 10.1038/s41591-022-01816-0
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

1491-1500

Informations de copyright

© 2022. The Author(s), under exclusive licence to Springer Nature America, Inc.

Références

World Health Organization. Weekly epidemiological update on COVID-19—8 March 2022. https://www.who.int/publications/m/item/weekly-epidemiological-update-on-covid-19---8-march-2022 (2022).
Kawasuji, H. et al. Transmissibility of COVID-19 depends on the viral load around onset in adult and symptomatic patients. PLoS ONE 15, e0243597 (2020).
doi: 10.1371/journal.pone.0243597
Marc, A. et al. Quantifying the relationship between SARS-CoV-2 viral load and infectiousness. eLife 10, e69302 (2021).
Marks, M. et al. Transmission of COVID-19 in 282 clusters in Catalonia, Spain: a cohort study. Lancet Infect. Dis. 21, 629–636 (2021).
doi: 10.1016/S1473-3099(20)30985-3
He, X. et al. Temporal dynamics in viral shedding and transmissibility of COVID-19. Nat. Med. 26, 672–675 (2020).
doi: 10.1038/s41591-020-0869-5
Wölfel, R. et al. Virological assessment of hospitalized patients with COVID-2019. Nature 581, 465–469 (2020).
doi: 10.1038/s41586-020-2196-x
Vetter, P. et al. Daily viral kinetics and innate and adaptive immune response assessment in COVID-19: a case series. mSphere 5, e00827-20 (2020).
Sia, S. F. et al. Pathogenesis and transmission of SARS-CoV-2 in golden hamsters. Nature 583, 834–838 (2020).
doi: 10.1038/s41586-020-2342-5
van Kampen, J. J. A. et al. Duration and key determinants of infectious virus shedding in hospitalized patients with coronavirus disease-2019 (COVID-19). Nat. Commun. 12, 267 (2021).
doi: 10.1038/s41467-020-20568-4
Despres, H. W. et al. Measuring infectious SARS-CoV-2 in clinical samples reveals a higher viral titer:RNA ratio for Delta and Epsilon vs. Alpha variants. Proc. Natl. Acad. Sci. USA. 119, e2116518119 (2022).
European Centre for Disease Prevention and Control. Rapid risk assessment: assessing SARS-CoV-2 circulation, variants of concern, non-pharmaceutical interventions and vaccine rollout in the EU/EEA, 15th update. https://www.ecdc.europa.eu/en/publications-data/rapid-risk-assessment-sars-cov-2-circulation-variants-concern (2021).
Xia, S. et al. Structure-based evidence for the enhanced transmissibility of the dominant SARS-CoV-2 B.1.1.7 variant (Alpha). Cell Discov. 7, 109 (2021).
doi: 10.1038/s41421-021-00349-z
Dejnirattisai, W. et al. Antibody evasion by the P.1 strain of SARS-CoV-2. Cell 184, 2939–2954 (2021).
doi: 10.1016/j.cell.2021.03.055
Jones, T. C. et al. Estimating infectiousness throughout SARS-CoV-2 infection course. Science 373, eabi5273 (2021).
Teyssou, E. et al. The Delta SARS-CoV-2 variant has a higher viral load than the Beta and the historical variants in nasopharyngeal samples from newly diagnosed COVID-19 patients. J. Infect. 83, e1–e3 (2021).
doi: 10.1016/j.jinf.2021.08.027
Imai, K., Ikeno, R., Tanaka, H. & Takada, N. SARS-CoV-2 Delta variant saliva viral load is 15-fold higher than wild-type strains. Preprint at https://www.medrxiv.org/content/10.1101/2021.11.29.21266980v1 (2021).
Kissler, S. M. et al. Viral dynamics of SARS-CoV-2 variants in vaccinated and unvaccinated persons. N. Engl. J. Med. 385, 2489–2491 (2021).
doi: 10.1056/NEJMc2102507
Mostaghimi, D., Valdez, C. N., Larson, H. T., Kalinich, C. C. & Iwasaki, A. Prevention of host-to-host transmission by SARS-CoV-2 vaccines. Lancet Infect. Dis. 22, e52–e58 (2022).
Harris, R. J. et al. Effect of vaccination on household transmission of SARS-CoV-2 in England. N. Engl. J. Med. 385, 759–760 (2021).
doi: 10.1056/NEJMc2107717
Eyre, D. W. et al. Effect of Covid-19 vaccination on transmission of Alpha and Delta Variants. N. Engl. J. Med. 386, 744–756 (2022).
Singanayagam, A. et al. Community transmission and viral load kinetics of the SARS-CoV-2 delta (B.1.617.2) variant in vaccinated and unvaccinated individuals in the UK: a prospective, longitudinal, cohort study. Lancet Infect. Dis. 22, 183–195 (2021).
Badu, K. et al. SARS-CoV-2 viral shedding and transmission dynamics: implications of WHO COVID-19 discharge guidelines. Front. Med. (Lausanne) 8, 648660 (2021).
Centers for Disease Control and Prevention. COVID-19 vaccine breakthrough infections reported to CDC—United States, January 1–April 30, 2021. MMWR Morb. Mortal. Wkly 70, 792–793. https://www.cdc.gov/mmwr/volumes/70/wr/mm7021e3.htm (2021).
Essaidi-Laziosi, M. et al. Estimating clinical SARS-CoV-2 infectiousness in Vero E6 and primary airway epithelial cells. Lancet Microbe 2, e571 (2021).
doi: 10.1016/S2666-5247(21)00216-0
Chen, P. Z. et al. SARS-CoV-2 shedding dynamics across the respiratory tract, sex, and disease severity for adult and pediatric COVID-19. eLife 10, e70458 (2021).
Jefferson, T., Spencer, E. A., Brassey, J. & Heneghan, C. Viral cultures for coronavirus disease 2019 infectivity assessment: a systematic review. Clin. Infect. Dis. 73, e3884–e3899 (2021).
doi: 10.1093/cid/ciaa1764
Takahashi, T. et al. Sex differences in immune responses that underlie COVID-19 disease outcomes. Nature 588, 315–320 (2020).
doi: 10.1038/s41586-020-2700-3
Corman, V. M. et al. Detection of 2019 novel coronavirus (2019-nCoV) by real-time RT–PCR. Euro. Surveill. 25, 2000045 (2020).
pmcid: 6988269
Wong, L.-Y. R. et al. Sensitization of non-permissive laboratory mice to SARS-CoV-2 with a replication-deficient adenovirus expressing human ACE2. STAR Protoc. 1, 100169 (2020).
doi: 10.1016/j.xpro.2020.100169
Killingley, B. et al. Safety, tolerability and viral kinetics during SARS-CoV-2 human challenge in young adults. Nat. Med. 28, 1031–1041 (2022).
doi: 10.1038/s41591-022-01780-9
Blazejewska, P. et al. Pathogenicity of different PR8 influenza A virus variants in mice is determined by both viral and host factors. Virology 412, 36–45 (2011).
doi: 10.1016/j.virol.2010.12.047
Christian von Wintersdorff, J. D. et al. Infections caused by the Delta variant (B.1.617.2) of SARS-CoV-2 are associated with increased viral loads compared to infections with the Alpha variant (B.1.1.7) or non-variants of concern. Priprint at https://doi.org/10.21203/rs.3.rs-777577/v1 (2021).
Tani-Sassa, C. et al. Viral loads and profile of the patients infected with SARS-CoV-2 Delta, Alpha, or R.1 variants in Tokyo. J. Med. Virol. 94, 1707–1710 (2021).
Wang, Y. et al. Transmission, viral kinetics and clinical characteristics of the emergent SARS-CoV-2 Delta VOC in Guangzhou, China. EClinicalMedicine 40, 101129 (2021).
doi: 10.1016/j.eclinm.2021.101129
Luo, C. H. et al. Infection with the SARS-CoV-2 Delta variant is associated with higher recovery of infectious virus compared to the Alpha variant in both unvaccinated and vaccinated individuals. Clin. Infect. Dis. ciab986 (2021).
Shamier, M. C. et al. Virological characteristics of SARS-CoV-2 vaccine breakthrough infections in health care workers. Preprint at https://www.medrxiv.org/content/10.1101/2021.08.20.21262158v1 (2021).
Chia, P. Y. et al. Virological and serological kinetics of SARS-CoV-2 Delta variant vaccine breakthrough infections: a multicentre cohort study. Clin. Microbiol. Infect. 28, 612.e1–612.e7 (2022).
Levine-Tiefenbrun, M. et al. Viral loads of Delta-variant SARS-CoV-2 breakthrough infections after vaccination and booster with BNT162b2. Nat. Med. 27, 2108–2110 (2021).
doi: 10.1038/s41591-021-01575-4
Emary, K. R. W. et al. Efficacy of ChAdOx1 nCoV-19 (AZD1222) vaccine against SARS-CoV-2 variant of concern 202012/01 (B.1.1.7): an exploratory analysis of a randomised controlled trial. Lancet 397, 1351–1362 (2021).
doi: 10.1016/S0140-6736(21)00628-0
Pouwels, K. B. et al. Effect of Delta variant on viral burden and vaccine effectiveness against new SARS-CoV-2 infections in the UK. Nat. Med. 27, 2127–2135 (2021).
doi: 10.1038/s41591-021-01548-7
Centers for Disease Control and Prevention. CDC updates and shortens recommended isolation and quarantine period for general population. https://www.cdc.gov/media/releases/2021/s1227-isolation-quarantine-guidance.html (2021).
Eggink, D. et al. Increased risk of infection with SARS-CoV-2 Omicron BA.1 compared with Delta in vaccinated and previously infected individuals, the Netherlands, 22 November 2021 to 19 January 2022. Euro Surveill. 27, 2101196 (2022).
doi: 10.2807/1560-7917.ES.2022.27.4.2101196
Carreño, J. M. et al. Activity of convalescent and vaccine serum against SARS-CoV-2 Omicron. Nature 602, 682–688 (2022).
doi: 10.1038/s41586-022-04399-5
Pulliam, J. R. C. et al. Increased risk of SARS-CoV-2 reinfection associated with emergence of Omicron in South Africa. Science 376, eabn4947 (2022).
doi: 10.1126/science.abn4947
Brandal, L. T. et al. Outbreak caused by the SARS-CoV-2 Omicron variant in Norway, November to December 2021. Euro. Surveill. 26, 2101147 (2021).
Lyngse, F. P. et al. SARS-CoV-2 Omicron VOC subvariants BA.1 and BA.2: evidence from Danish households. Preprint at https://www.medrxiv.org/content/10.1101/2022.01.28.22270044v1 (2022).
Kuhlmann, C. et al. Breakthrough infections with SARS-CoV-2 omicron despite mRNA vaccine booster dose. Lancet 399, 625–626 (2022).
doi: 10.1016/S0140-6736(22)00090-3
Hay, J. A. et al. Viral dynamics and duration of PCR positivity of the SARS-CoV-2 Omicron variant. Preprint at https://www.medrxiv.org/content/10.1101/2022.01.13.22269257v1 (2022).
Sentis, C. SARS-CoV-2 Omicron variant, lineage BA.1, is associated with lower viral load in nasopharyngeal samples compared to Delta variant. Viruses 14, 919 (2022).
doi: 10.3390/v14050919
Migueres, M. et al. Influence of immune escape and nasopharyngeal virus load on the spread of SARS-CoV-2 Omicron variant. J. Infect. 84, e7–e9 (2022).
Peacock, T. P. et al. The SARS-CoV-2 variant, Omicron, shows rapid replication in human primary nasal epithelial cultures and efficiently uses the endosomal route of entry. Preprint at https://www.biorxiv.org/content/10.1101/2021.12.31.474653v1 (2022).
Hui, K. P. Y. et al. SARS-CoV-2 Omicron variant replication in human bronchus and lung ex vivo. Nature 603, 715–720 (2022).
Sabine Yerly, L. K., Schibler, M. & Eckerle, I. Protocol for specific RT–PCRs for marker regions of the spike indicative of the Omicron variant (B.1.1.529). Centre for Emerging Viral Diseases, Geneva University Hospitals (December 2, 2021).
Case, J. B., Bailey, A. L., Kim, A. S., Chen, R. E. & Diamond, M. S. Growth, detection, quantification, and inactivation of SARS-CoV-2. Virology 548, 39–48 (2020).
doi: 10.1016/j.virol.2020.05.015

Auteurs

Olha Puhach (O)

Department of Microbiology and Molecular Medicine, Faculty of Medicine, University of Geneva, Geneva, Switzerland.

Kenneth Adea (K)

Department of Microbiology and Molecular Medicine, Faculty of Medicine, University of Geneva, Geneva, Switzerland.

Nicolas Hulo (N)

Service for Biomathematical and Biostatistical Analyses, Institute of Genetics and Genomics, University of Geneva, Geneva, Switzerland.

Pascale Sattonnet (P)

Department of Microbiology and Molecular Medicine, Faculty of Medicine, University of Geneva, Geneva, Switzerland.

Camille Genecand (C)

Cantonal Health Service, General Directorate for Health, Geneva, Switzerland.

Anne Iten (A)

Service of Prevention and Infection Control, Directorate of Medicine and Quality, Geneva University Hospitals, Geneva, Switzerland.

Frédérique Jacquérioz (F)

Geneva Centre for Emerging Viral Diseases, Geneva University Hospitals, Geneva, Switzerland.
Division of Tropical and Humanitarian Medicine, Geneva University Hospitals, Geneva, Switzerland.
Primary Care Division, Geneva University Hospitals, Geneva, Switzerland.

Laurent Kaiser (L)

Geneva Centre for Emerging Viral Diseases, Geneva University Hospitals, Geneva, Switzerland.
Laboratory of Virology, Division of Laboratory Medicine, Geneva University Hospitals & Faculty of Medicine, University of Geneva, Geneva, Switzerland.
Division of Infectious Diseases, Geneva University Hospitals, Geneva, Switzerland.

Pauline Vetter (P)

Geneva Centre for Emerging Viral Diseases, Geneva University Hospitals, Geneva, Switzerland. pauline.vetter@hcuge.ch.
Laboratory of Virology, Division of Laboratory Medicine, Geneva University Hospitals & Faculty of Medicine, University of Geneva, Geneva, Switzerland. pauline.vetter@hcuge.ch.
Division of Infectious Diseases, Geneva University Hospitals, Geneva, Switzerland. pauline.vetter@hcuge.ch.

Isabella Eckerle (I)

Department of Microbiology and Molecular Medicine, Faculty of Medicine, University of Geneva, Geneva, Switzerland. Isabella.eckerle@hcuge.ch.
Geneva Centre for Emerging Viral Diseases, Geneva University Hospitals, Geneva, Switzerland. Isabella.eckerle@hcuge.ch.
Division of Infectious Diseases, Geneva University Hospitals, Geneva, Switzerland. Isabella.eckerle@hcuge.ch.

Benjamin Meyer (B)

Centre for Vaccinology, Department of Pathology and Immunology, University of Geneva, Geneva, Switzerland. benjamin.meyer@unige.ch.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH