Microbial Community Changes in 26,500-Year-Old Thawing Permafrost.
16S
Greenland
abrupt thaw
amplicon sequencing
biodiversity
fungi
permafrost erosion
soil microbiome
Journal
Frontiers in microbiology
ISSN: 1664-302X
Titre abrégé: Front Microbiol
Pays: Switzerland
ID NLM: 101548977
Informations de publication
Date de publication:
2022
2022
Historique:
received:
30
09
2021
accepted:
09
02
2022
entrez:
11
4
2022
pubmed:
12
4
2022
medline:
12
4
2022
Statut:
epublish
Résumé
Northern permafrost soils store more than half of the global soil carbon. Frozen for at least two consecutive years, but often for millennia, permafrost temperatures have increased drastically in the last decades. The resulting thermal erosion leads not only to gradual thaw, resulting in an increase of seasonally thawing soil thickness, but also to abrupt thaw events, such as sudden collapses of the soil surface. These could affect 20% of the permafrost zone and half of its organic carbon, increasing accessibility for deeper rooting vegetation and microbial decomposition into greenhouse gases. Knowledge gaps include the impact of permafrost thaw on the soil microfauna as well as key taxa to change the microbial mineralization of ancient permafrost carbon stocks during erosion. Here, we present the first sequencing study of an abrupt permafrost erosion microbiome in Northeast Greenland, where a thermal erosion gully collapsed in the summer of 2018, leading to the thawing of 26,500-year-old permafrost material. We investigated which soil parameters (pH, soil carbon content, age and moisture, organic and mineral horizons, and permafrost layers) most significantly drove changes of taxonomic diversity and the abundance of soil microorganisms in two consecutive years of intense erosion. Sequencing of the prokaryotic 16S rRNA and fungal ITS2 gene regions at finely scaled depth increments revealed decreasing alpha diversity with depth, soil age, and pH. The most significant drivers of variation were found in the soil age, horizons, and permafrost layer for prokaryotic and fungal beta diversity. Permafrost was mainly dominated by Proteobacteria and Firmicutes, with
Identifiants
pubmed: 35401488
doi: 10.3389/fmicb.2022.787146
pmc: PMC8988141
doi:
Types de publication
Journal Article
Langues
eng
Pagination
787146Informations de copyright
Copyright © 2022 Scheel, Zervas, Jacobsen and Christensen.
Déclaration de conflit d'intérêts
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Références
Environ Microbiol. 2018 Dec;20(12):4328-4342
pubmed: 29971895
FEMS Microbiol Ecol. 2019 Sep 1;95(9):
pubmed: 31429869
Nat Rev Microbiol. 2020 Jan;18(1):35-46
pubmed: 31586158
Curr Biol. 2004 Jan 6;14(1):R9-10
pubmed: 14711425
Front Microbiol. 2020 May 15;11:796
pubmed: 32499761
Nat Biotechnol. 2013 Sep;31(9):814-21
pubmed: 23975157
Microbiome. 2017 Jul 19;5(1):82
pubmed: 28724401
FEMS Microbiol Ecol. 2017 Mar 1;93(3):
pubmed: 28115400
Nat Biotechnol. 2019 Aug;37(8):852-857
pubmed: 31341288
Ecology. 2007 Jun;88(6):1354-64
pubmed: 17601128
Environ Microbiol. 2016 May;18(5):1403-14
pubmed: 26271760
FEMS Microbiol Ecol. 2011 Jun;76(3):476-91
pubmed: 21314705
Sci Total Environ. 2022 Feb 10;807(Pt 1):150720
pubmed: 34610405
Mol Ecol. 2015 Jan;24(1):222-34
pubmed: 25424441
J Med Econ. 2020 Mar;23(3):228-234
pubmed: 31505982
FEMS Microbiol Ecol. 2018 Aug 1;94(8):
pubmed: 29912311
Front Microbiol. 2015 Apr 30;6:399
pubmed: 25983731
Extremophiles. 2018 May;22(3):447-459
pubmed: 29429010
Sci Rep. 2018 Jan 11;8(1):504
pubmed: 29323168
Environ Microbiol Rep. 2021 Dec;13(6):878-883
pubmed: 34459151
ISME J. 2019 May;13(5):1345-1359
pubmed: 30692629
Nat Rev Microbiol. 2014 Jun;12(6):414-25
pubmed: 24814065
ISME J. 2014 Apr;8(4):841-53
pubmed: 24335828
Appl Environ Microbiol. 2019 Mar 22;85(7):
pubmed: 30683748
FEMS Microbiol Ecol. 2007 Feb;59(2):452-65
pubmed: 17328122
ISME J. 2014 Jan;8(1):139-49
pubmed: 23985750
Front Microbiol. 2015 Mar 16;6:197
pubmed: 25852660
Sci Rep. 2017 Mar 21;7:45028
pubmed: 28322330
Appl Microbiol Biotechnol. 2019 Apr;103(7):2857-2871
pubmed: 30729286
Microbiome. 2018 Jun 8;6(1):102
pubmed: 29884244
Environ Microbiol. 2010 Nov;12(11):2998-3006
pubmed: 20561020
Nat Rev Microbiol. 2017 Oct;15(10):579-590
pubmed: 28824177
Environ Microbiol. 2019 Oct;21(10):3711-3727
pubmed: 31206918
Environ Microbiol. 2017 Aug;19(8):3201-3218
pubmed: 28574203
ISME J. 2017 Dec;11(12):2639-2643
pubmed: 28731476
Nucleic Acids Res. 2019 Jan 8;47(D1):D259-D264
pubmed: 30371820
PLoS One. 2011;6(8):e23742
pubmed: 21897856
Environ Microbiol. 2016 Apr;18(4):1200-11
pubmed: 26626228
Sci Rep. 2020 Dec 29;10(1):22412
pubmed: 33376244
Nature. 2015 Apr 9;520(7546):171-9
pubmed: 25855454
Microb Genom. 2020 May;6(5):
pubmed: 32392124
PLoS One. 2014 Aug 21;9(8):e105592
pubmed: 25144201
FEMS Microbiol Ecol. 2020 Mar 1;96(3):
pubmed: 32031215
ISME J. 2010 Sep;4(9):1206-14
pubmed: 20393573
Nucleic Acids Res. 2013 Jan;41(Database issue):D590-6
pubmed: 23193283
ISME J. 2017 Oct;11(10):2305-2318
pubmed: 28696425
ISME J. 2018 Sep;12(9):2129-2141
pubmed: 29875436
Sci Rep. 2017 Feb 23;7:43338
pubmed: 28230151
Astrobiology. 2003 Summer;3(2):331-41
pubmed: 14577882
Nat Ecol Evol. 2018 Sep;2(9):1443-1448
pubmed: 30013133
FEMS Microbiol Ecol. 2014 Aug;89(2):426-41
pubmed: 24819653
Appl Microbiol Biotechnol. 2019 Mar;103(6):2537-2549
pubmed: 30719551
FEMS Microbiol Ecol. 2007 Jul;61(1):1-15
pubmed: 17428301
PLoS One. 2014 Jan 08;9(1):e84761
pubmed: 24416279
Microbiome. 2020 Jan 17;8(1):3
pubmed: 31952472
Environ Microbiol Rep. 2018 Dec;10(6):611-625
pubmed: 30028082
Front Microbiol. 2020 Nov 13;11:596589
pubmed: 33281795
Nat Rev Microbiol. 2019 Sep;17(9):569-586
pubmed: 31213707
Nature. 2015 May 14;521(7551):208-12
pubmed: 25739499
Front Microbiol. 2014 Oct 16;5:541
pubmed: 25360132
PLoS One. 2010 Mar 10;5(3):e9490
pubmed: 20224823
Front Microbiol. 2014 Oct 02;5:516
pubmed: 25324836
Proc Natl Acad Sci U S A. 2007 Sep 4;104(36):14401-5
pubmed: 17728401
Trends Microbiol. 2013 Dec;21(12):641-51
pubmed: 24139848
ISME J. 2010 Oct;4(10):1340-51
pubmed: 20445636
ISME J. 2013 Feb;7(2):299-311
pubmed: 22955232
Front Microbiol. 2019 Jun 27;10:1442
pubmed: 31316487