Goslin 2.0 Implements the Recent Lipid Shorthand Nomenclature for MS-Derived Lipid Structures.
Journal
Analytical chemistry
ISSN: 1520-6882
Titre abrégé: Anal Chem
Pays: United States
ID NLM: 0370536
Informations de publication
Date de publication:
26 04 2022
26 04 2022
Historique:
pubmed:
12
4
2022
medline:
28
4
2022
entrez:
11
4
2022
Statut:
ppublish
Résumé
Goslin is the first grammar-based computational library for the recognition/parsing and normalization of lipid names following the hierarchical lipid shorthand nomenclature. The new version Goslin 2.0 implements the latest nomenclature and adds an additional grammar to recognize systematic IUPAC-IUB fatty acyl names as stored, e.g., in the LIPID MAPS database and is perfectly suited to update lipid names in LIPID MAPS or HMDB databases to the latest nomenclature. Goslin 2.0 is available as a standalone web application with a REST API as well as C++, C#, Java, Python 3, and R libraries. Importantly, it can be easily included in lipidomics tools and scripts providing direct access to translation functions. All implementations are open source.
Identifiants
pubmed: 35404045
doi: 10.1021/acs.analchem.1c05430
pmc: PMC9047418
doi:
Substances chimiques
Lipids
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
6097-6101Références
Nat Metab. 2019 Aug;1(8):745-747
pubmed: 32694765
PLoS Comput Biol. 2015 Sep 22;11(9):e1004511
pubmed: 26393792
J Lipid Res. 2013 Jun;54(6):1523-1530
pubmed: 23549332
Annu Rev Anal Chem (Palo Alto Calif). 2010;3:433-65
pubmed: 20636050
Sci Data. 2016 Mar 15;3:160018
pubmed: 26978244
Cell. 2010 Dec 10;143(6):888-95
pubmed: 21145456
Nucleic Acids Res. 2007 Jan;35(Database issue):D521-6
pubmed: 17202168
J Lipid Res. 2020 Dec;61(12):1539-1555
pubmed: 33037133
Anal Chim Acta. 2021 Feb 22;1147:199-210
pubmed: 33485579
Nucleic Acids Res. 2007 Jan;35(Database issue):D527-32
pubmed: 17098933
Nat Methods. 2020 Dec;17(12):1173-1174
pubmed: 33199890
Nucleic Acids Res. 2021 Jul 2;49(W1):W346-W351
pubmed: 33950258
Nat Commun. 2020 Apr 28;11(1):2057
pubmed: 32345972
Bioinformatics. 2015 Sep 1;31(17):2860-6
pubmed: 25943471
Anal Chem. 2020 Aug 18;92(16):10957-10960
pubmed: 32589019