DNA Metabarcoding and Isolation by Baiting Complement Each Other in Revealing

ASVs DNA sequencing Illumina botanical garden citrus orchards detection eDNA leaf baiting metabarcoding nature reserve new species rhizosphere soil

Journal

Journal of fungi (Basel, Switzerland)
ISSN: 2309-608X
Titre abrégé: J Fungi (Basel)
Pays: Switzerland
ID NLM: 101671827

Informations de publication

Date de publication:
22 Mar 2022
Historique:
received: 07 03 2022
revised: 19 03 2022
accepted: 21 03 2022
entrez: 21 4 2022
pubmed: 22 4 2022
medline: 22 4 2022
Statut: epublish

Résumé

Isolation techniques supplemented by sequencing of DNA from axenic cultures have provided a robust methodology for the study of

Identifiants

pubmed: 35448560
pii: jof8040330
doi: 10.3390/jof8040330
pmc: PMC9028584
pii:
doi:

Types de publication

Journal Article

Langues

eng

Références

Phytopathology. 2013 Jun;103(6):610-22
pubmed: 23384862
Persoonia. 2017 Jun;38:100-135
pubmed: 29151629
Plants (Basel). 2020 May 22;9(5):
pubmed: 32455920
Mol Plant Pathol. 2006 Sep;7(5):365-79
pubmed: 20507453
Mol Ecol. 2021 Oct;30(20):5164-5178
pubmed: 34398981
Glob Chang Biol. 2017 Apr;23(4):1661-1674
pubmed: 27596590
PLoS One. 2015 Dec 09;10(12):e0143234
pubmed: 26649428
J Fungi (Basel). 2021 Feb 27;7(3):
pubmed: 33673441
Mycologia. 2014 May-Jun;106(3):431-47
pubmed: 24871599
Mycol Res. 2009 Mar;113(Pt 3):298-307
pubmed: 19061958
PLoS One. 2015 Mar 16;10(3):e0119311
pubmed: 25775250
J Mol Biol. 1990 Oct 5;215(3):403-10
pubmed: 2231712
Plant Dis. 2018 Jan;102(1):132-139
pubmed: 30673463
Annu Rev Phytopathol. 2000 Sep;38:541-576
pubmed: 11701854
J Fungi (Basel). 2021 Oct 16;7(10):
pubmed: 34682290
FEMS Microbiol Ecol. 2018 May 1;94(5):
pubmed: 29579182
Sci Rep. 2019 Mar 29;9(1):5315
pubmed: 30926869
IMA Fungus. 2017 Dec;8(2):219-244
pubmed: 29242773
PeerJ. 2019 May 16;7:e6931
pubmed: 31143546
Mycol Res. 2007 Nov;111(Pt 11):1321-38
pubmed: 18032009
PLoS One. 2015 Mar 31;10(3):e0120571
pubmed: 25826684
Plant Dis. 2002 Mar;86(3):205-214
pubmed: 30818595
Mol Plant Pathol. 2008 Nov;9(6):729-40
pubmed: 19019002
Plant Dis. 2012 Aug;96(8):1080-1103
pubmed: 30727075
Mycologia. 2015 Jan-Feb;107(1):54-65
pubmed: 25261495
Fungal Biol. 2021 Jun;125(6):477-484
pubmed: 34024595
Persoonia. 2017 Jun;38:240-384
pubmed: 29151634
IMA Fungus. 2017 Dec;8(2):355-384
pubmed: 29242780
Persoonia. 2009 Jun;22:95-110
pubmed: 20198142
Persoonia. 2009 Jun;22:1-13
pubmed: 20198133
FEMS Microbiol Ecol. 2013 Sep;85(3):433-42
pubmed: 23560715
Phytopathology. 2012 Apr;102(4):348-64
pubmed: 22185336
Mol Plant Pathol. 2015 May;16(4):413-34
pubmed: 25178392
Mol Plant Pathol. 2018 Mar 08;:
pubmed: 29517840
PLoS One. 2015 Jul 01;10(7):e0131069
pubmed: 26132745
Fungal Biol. 2011 Apr-May;115(4-5):432-42
pubmed: 21530925
Phytopathology. 2016 Mar;106(3):305-13
pubmed: 26574783
Plant Dis. 2017 Mar;101(3):421-427
pubmed: 30677341
Persoonia. 2013 Dec;31:63-76
pubmed: 24761035
Mycology. 2014 Jun;5(2):43-51
pubmed: 24999436
J Microbiol Methods. 2015 Mar;110:61-7
pubmed: 25601792
Mol Plant Pathol. 2018 Feb;19(2):260-285
pubmed: 28519717
Plants (Basel). 2020 Jun 30;9(7):
pubmed: 32630077
J Microbiol Methods. 2012 Mar;88(3):356-68
pubmed: 22226752
IMA Fungus. 2013 Jul;4(1):123-31
pubmed: 23898418
Annu Rev Phytopathol. 2005;43:309-35
pubmed: 16078887
PLoS One. 2017 Feb 16;12(2):e0172085
pubmed: 28208159
Fungal Genet Biol. 2000 Jun;30(1):17-32
pubmed: 10955905
Mycol Res. 2003 Mar;107(Pt 3):277-90
pubmed: 12825496
Brief Bioinform. 2015 Sep;16(5):745-58
pubmed: 25673291
Phytopathology. 2016 Sep;106(9):1006-14
pubmed: 27111805

Auteurs

Federico La Spada (F)

Department of Agriculture, Food and Environment, University of Catania, 95123 Catania, Italy.

Peter J A Cock (PJA)

The James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK.

Eva Randall (E)

The James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK.

Antonella Pane (A)

Department of Agriculture, Food and Environment, University of Catania, 95123 Catania, Italy.

David E L Cooke (DEL)

The James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK.

Santa Olga Cacciola (SO)

Department of Agriculture, Food and Environment, University of Catania, 95123 Catania, Italy.

Classifications MeSH