Consistent Quantification of Complex Dynamics via a Novel Statistical Complexity Measure.

Jensen–Shannon co-evolution complexity entropy

Journal

Entropy (Basel, Switzerland)
ISSN: 1099-4300
Titre abrégé: Entropy (Basel)
Pays: Switzerland
ID NLM: 101243874

Informations de publication

Date de publication:
04 Apr 2022
Historique:
received: 07 03 2022
revised: 29 03 2022
accepted: 02 04 2022
entrez: 23 4 2022
pubmed: 24 4 2022
medline: 24 4 2022
Statut: epublish

Résumé

Natural systems often show complex dynamics. The quantification of such complex dynamics is an important step in, e.g., characterization and classification of different systems or to investigate the effect of an external perturbation on the dynamics. Promising routes were followed in the past using concepts based on (Shannon's) entropy. Here, we propose a new, conceptually sound measure that can be pragmatically computed, in contrast to pure theoretical concepts based on, e.g., Kolmogorov complexity. We illustrate the applicability using a toy example with a control parameter and go on to the molecular evolution of the HIV1 protease for which drug treatment can be regarded as an external perturbation that changes the complexity of its molecular evolutionary dynamics. In fact, our method identifies exactly those residues which are known to bind the drug molecules by their noticeable signal. We furthermore apply our method in a completely different domain, namely foreign exchange rates, and find convincing results as well.

Identifiants

pubmed: 35455168
pii: e24040505
doi: 10.3390/e24040505
pmc: PMC9032123
pii:
doi:

Types de publication

Journal Article

Langues

eng

Subventions

Organisme : Deutsche Forschungsgemeinschaft
ID : HA 5261/3-1
Organisme : Hessen State Ministry of Higher Education, Research and the Arts
ID : iNAPO
Organisme : Deutsche Forschungsgemeinschaft
ID : OA Fonds
Organisme : TU Darmstadt
ID : OA Fonds

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Auteurs

Frank Keul (F)

Department of Biology, Technische Universität Darmstadt, 64289 Darmstadt, Germany.

Kay Hamacher (K)

Department of Physics, Technische Universität Darmstadt, 64289 Darmstadt, Germany.
Department of Computer Science, Technische Universität Darmstadt, 64289 Darmstadt, Germany.

Classifications MeSH