A Toolkit for Profiling the Immune Landscape of Pediatric Central Nervous System Malignancies.

central nervous system malignancy flow cytometry immune monitoring immunohistochemistry immunotherapy transcriptomics tumor immune microenvironment

Journal

Frontiers in immunology
ISSN: 1664-3224
Titre abrégé: Front Immunol
Pays: Switzerland
ID NLM: 101560960

Informations de publication

Date de publication:
2022
Historique:
received: 28 01 2022
accepted: 11 03 2022
entrez: 25 4 2022
pubmed: 26 4 2022
medline: 27 4 2022
Statut: epublish

Résumé

The prognosis of pediatric central nervous system (CNS) malignancies remains dismal due to limited treatment options, resulting in high mortality rates and long-term morbidities. Immunotherapies, including checkpoint inhibition, cancer vaccines, engineered T cell therapies, and oncolytic viruses, have promising results in some hematological and solid malignancies, and are being investigated in clinical trials for various high-grade CNS malignancies. However, the role of the tumor immune microenvironment (TIME) in CNS malignancies is mostly unknown for pediatric cases. In order to successfully implement immunotherapies and to eventually predict which patients would benefit from such treatments, in-depth characterization of the TIME at diagnosis and throughout treatment is essential. In this review, we provide an overview of techniques for immune profiling of CNS malignancies, and detail how they can be utilized for different tissue types and studies. These techniques include immunohistochemistry and flow cytometry for quantifying and phenotyping the infiltrating immune cells, bulk and single-cell transcriptomics for describing the implicated immunological pathways, as well as functional assays. Finally, we aim to describe the potential benefits of evaluating other compartments of the immune system implicated by cancer therapies, such as cerebrospinal fluid and blood, and how such liquid biopsies are informative when designing immune monitoring studies. Understanding and uniformly evaluating the TIME and immune landscape of pediatric CNS malignancies will be essential to eventually integrate immunotherapy into clinical practice.

Identifiants

pubmed: 35464481
doi: 10.3389/fimmu.2022.864423
pmc: PMC9022116
doi:

Substances chimiques

Cancer Vaccines 0

Types de publication

Journal Article Review Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

864423

Informations de copyright

Copyright © 2022 Rozowsky, Meesters-Ensing, Lammers, Belle, Nierkens, Kranendonk, Kester, Calkoen and van der Lugt.

Déclaration de conflit d'intérêts

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Références

Am J Respir Cell Mol Biol. 2018 Aug;59(2):145-157
pubmed: 29624415
Nat Biotechnol. 2019 Jul;37(7):773-782
pubmed: 31061481
Cancer Immunol Res. 2019 Jul;7(7):1148-1161
pubmed: 31088845
Nature. 2019 Aug;572(7767):67-73
pubmed: 31043743
Cancers (Basel). 2020 Jun 11;12(6):
pubmed: 32545204
Nat Commun. 2021 Nov 1;12(1):6278
pubmed: 34725363
Nat Rev Genet. 2016 May;17(5):257-71
pubmed: 26996076
Curr Protoc Cytom. 2013;Chapter 9:9.2.1-9.2.26
pubmed: 23546778
Cancer Immunol Immunother. 2019 Feb;68(2):305-318
pubmed: 30483834
J Immunol Methods. 1990 Apr 17;128(2):189-201
pubmed: 1691237
Cancer Res. 2008 Nov 1;68(21):8673-7
pubmed: 18974108
N Engl J Med. 2015 Nov 5;373(19):1803-13
pubmed: 26406148
Nat Protoc. 2021 Aug;16(8):3802-3835
pubmed: 34215862
Cytotherapy. 2019 Sep;21(9):973-986
pubmed: 31351799
Front Immunol. 2021 Apr 16;12:672356
pubmed: 33936118
Science. 2016 Jul 1;353(6294):78-82
pubmed: 27365449
Nat Rev Mol Cell Biol. 2019 May;20(5):285-302
pubmed: 30659282
Oncoimmunology. 2018 Jul 23;7(9):e1476816
pubmed: 30228944
Nat Methods. 2017 Mar;14(3):267-270
pubmed: 28092691
Science. 2019 Mar 29;363(6434):1463-1467
pubmed: 30923225
Cell. 2015 May 21;161(5):1202-1214
pubmed: 26000488
Oncotarget. 2018 Dec 14;9(98):37112-37124
pubmed: 30647848
Nat Commun. 2018 Feb 12;9(1):619
pubmed: 29434199
Front Immunol. 2021 May 19;12:687673
pubmed: 34093591
Front Oncol. 2020 Aug 12;10:1582
pubmed: 32903405
Curr Protoc Cytom. 2015 Jul 01;73:5.1.1-5.1.16
pubmed: 26132177
Cancers (Basel). 2021 Mar 11;13(6):
pubmed: 33799782
Nat Rev Clin Oncol. 2021 Apr;18(4):215-229
pubmed: 33473220
BMC Neurosci. 2016 Jun 01;17(1):30
pubmed: 27251756
Proc Natl Acad Sci U S A. 2014 Aug 19;111(33):E3458-66
pubmed: 25082897
Med Sci Monit Basic Res. 2014 Aug 23;20:138-42
pubmed: 25149683
Nature. 2019 Jan;565(7738):234-239
pubmed: 30568305
Cancer Cell. 2010 Jan 19;17(1):98-110
pubmed: 20129251
Nat Methods. 2016 Apr;13(4):329-332
pubmed: 26950746
Oncoimmunology. 2016 Nov 29;6(2):e1252894
pubmed: 28344863
Cancer Cell. 2021 Apr 12;39(4):509-528.e20
pubmed: 33577785
Sci Rep. 2021 Apr 28;11(1):9219
pubmed: 33911148
Cancer Cell. 2021 Nov 8;39(11):1519-1530.e4
pubmed: 34678152
Nat Commun. 2021 Feb 19;12(1):1151
pubmed: 33608526
J Neuropathol Exp Neurol. 2018 Aug 1;77(8):696-702
pubmed: 29878245
Nat Methods. 2017 Sep;14(9):865-868
pubmed: 28759029
Nat Genet. 2019 Dec;51(12):1702-1713
pubmed: 31768071
Genome Biol. 2014;15(12):550
pubmed: 25516281
Bioinformatics. 2011 Jun 15;27(12):1739-40
pubmed: 21546393
Methods Mol Biol. 2016;1458:291-310
pubmed: 27581030
Clin Cancer Res. 2014 Oct 1;20(19):5064-74
pubmed: 24714771
Nat Methods. 2021 Aug;18(8):881-892
pubmed: 34282327
Neuron. 2019 Nov 6;104(3):442-449
pubmed: 31697921
Science. 2013 Mar 29;339(6127):1546-58
pubmed: 23539594
Nat Med. 2020 May;26(5):792-802
pubmed: 32405060
Nat Methods. 2013 Nov;10(11):1096-8
pubmed: 24056875
Genome Biol. 2018 Feb 6;19(1):15
pubmed: 29409532
Nat Rev Cancer. 2020 Jan;20(1):12-25
pubmed: 31806885
Leukemia. 2003 Jun;17(6):1013-34
pubmed: 12764363
Cancer Cell. 2018 May 14;33(5):829-842.e5
pubmed: 29763623
Nat Med. 2020 May;26(5):712-719
pubmed: 32341579
Methods Mol Biol. 2018;1741:221-226
pubmed: 29392704
Genome Med. 2021 May 19;13(1):88
pubmed: 34011400
Trends Immunol. 2015 Apr;36(4):229-39
pubmed: 25770924
Nat Neurosci. 2019 Dec;22(12):2098-2110
pubmed: 31740814
Cancer Discov. 2016 Aug;6(8):827-37
pubmed: 27301722
Nature. 2017 Jul 19;547(7663):311-317
pubmed: 28726821
Front Genet. 2019 May 03;10:419
pubmed: 31130992
Front Immunol. 2017 Dec 21;8:1870
pubmed: 29312346
Cancer Immunol Immunother. 2015 Apr;64(4):419-27
pubmed: 25555571
Nat Commun. 2019 Aug 19;10(1):3731
pubmed: 31427603
J Neurooncol. 2018 Apr;137(2):269-278
pubmed: 29322427
Nat Commun. 2020 Jan 14;11(1):247
pubmed: 31937773
Oncoimmunology. 2018 May 24;7(9):e1462430
pubmed: 30228931
Clin Cancer Res. 2010 Oct 1;16(19):4892-8
pubmed: 20719934
J Immunol. 2012 May 15;188(10):4715-9
pubmed: 22556132
J Immunother Cancer. 2020 Aug;8(2):
pubmed: 32753545
J Am Soc Mass Spectrom. 2021 Apr 7;32(4):872-894
pubmed: 33656885
CA Cancer J Clin. 2021 Sep;71(5):381-406
pubmed: 34427324
J Immunol. 2013 Nov 1;191(9):4880-8
pubmed: 24078694
J Exp Med. 1983 Feb 1;157(2):743-54
pubmed: 6600491
N Engl J Med. 2015 Oct 22;373(17):1627-39
pubmed: 26412456
Oncoimmunology. 2017 Nov 27;7(3):e1398877
pubmed: 29399402
Nat Rev Clin Oncol. 2021 Nov;18(11):729-744
pubmed: 34117475
Cell. 2020 Jun 25;181(7):1643-1660.e17
pubmed: 32470396
Nature. 2019 Jan;565(7738):240-245
pubmed: 30568303
Nat Neurosci. 2011 Jul 31;14(9):1142-9
pubmed: 21804537
Genome Biol. 2016 Oct 20;17(1):218
pubmed: 27765066
Sci Adv. 2021 Oct;7(40):eabh3243
pubmed: 34586841
Oncoimmunology. 2019 Oct 21;8(12):e1678921
pubmed: 31741780
Bioinformatics. 2010 Jan 1;26(1):139-40
pubmed: 19910308
Nat Commun. 2021 Mar 8;12(1):1503
pubmed: 33686071
Proc Natl Acad Sci U S A. 2005 Oct 25;102(43):15545-50
pubmed: 16199517
Cancers (Basel). 2013 Apr 03;5(2):357-71
pubmed: 24216981
Pharmacol Ther. 2013 Sep;139(3):313-26
pubmed: 23644076
Nat Commun. 2019 Jan 22;10(1):380
pubmed: 30670690
Nature. 2011 Oct 26;478(7370):442-3
pubmed: 22031417
BMC Cancer. 2023 Jul 3;23(1):618
pubmed: 37400763
Nat Biotechnol. 2021 Mar;39(3):313-319
pubmed: 33288904
Nat Rev Genet. 2021 Feb;22(2):71-88
pubmed: 33168968
J Neurooncol. 2019 May;143(1):15-25
pubmed: 30827009
Bioinformatics. 2018 Aug 15;34(16):2846-2847
pubmed: 29659703
J Immunother Cancer. 2015 Dec 15;3:42
pubmed: 26674611
Nat Commun. 2021 Oct 12;12(1):5955
pubmed: 34642316
Nat Med. 2021 Sep;27(9):1544-1552
pubmed: 34253928
Nature. 2014 Feb 27;506(7489):451-5
pubmed: 24553141
Immunity. 2014 Jul 17;41(1):14-20
pubmed: 25035950
Biotechniques. 2008 Apr;44(5):619-26
pubmed: 18474036
Oncotarget. 2017 Jun 14;8(38):64564-64578
pubmed: 28969094
Nat Commun. 2019 Jul 5;10(1):2975
pubmed: 31278265
Cell. 2019 Aug 8;178(4):835-849.e21
pubmed: 31327527
J Neurosurg. 2018 Mar;128(3):710-716
pubmed: 28474991
Cancer Res. 2015 Jul 1;75(13):2587-93
pubmed: 26069246
N Engl J Med. 2017 Oct 5;377(14):1345-1356
pubmed: 28889792
Clin Cancer Res. 2010 May 1;16(9):2646-55
pubmed: 20406835
Front Immunol. 2019 Feb 08;10:168
pubmed: 30800125
Toxicol Rep. 2020 Nov 06;7:1514-1530
pubmed: 33251119
Nat Commun. 2022 Feb 17;13(1):925
pubmed: 35177622
N Engl J Med. 2015 Jul 2;373(1):23-34
pubmed: 26027431
Neuro Oncol. 2015 Nov;17(11):1486-96
pubmed: 25825052
JCI Insight. 2018 Nov 2;3(21):
pubmed: 30385717
Cancers (Basel). 2021 Sep 12;13(18):
pubmed: 34572809
Genome Med. 2016 Jul 27;8(1):80
pubmed: 27460926
Eur J Immunol. 2017 Oct;47(10):1584-1797
pubmed: 29023707
J Pers Med. 2020 Sep 03;10(3):
pubmed: 32899203
Curr Protoc Mol Biol. 2017 Apr 3;118:25C.1.1-25C.1.23
pubmed: 28369679
Cell. 2021 Mar 4;184(5):1281-1298.e26
pubmed: 33592174
Neuro Oncol. 2009 Aug;11(4):394-402
pubmed: 19028999
Neurosurg Focus. 2010 Jan;28(1):E3
pubmed: 20043718
Front Oncol. 2019 Apr 30;9:327
pubmed: 31114757
Eur J Immunol. 2019 Oct;49(10):1457-1973
pubmed: 31633216
Neuro Oncol. 2021 Aug 2;23(8):1231-1251
pubmed: 34185076
Nature. 2019 Aug;572(7767):74-79
pubmed: 31341285
Neuro Oncol. 2019 Aug 5;21(8):968-980
pubmed: 30805642
Neurol India. 2020 Nov-Dec;68(6):1385-1388
pubmed: 33342873
Front Oncol. 2012 Aug 24;2:105
pubmed: 22937526
PLoS One. 2020 Jun 26;15(6):e0235413
pubmed: 32589655
Nat Neurosci. 2021 Apr;24(4):595-610
pubmed: 33782623
J Neurooncol. 2014 Nov;120(2):293-301
pubmed: 25115738
Eur J Cancer. 2021 May;149:193-210
pubmed: 33866228
Transl Oncol. 2020 Feb;13(2):365-371
pubmed: 31887631
Nucleic Acids Res. 2000 Jan 1;28(1):27-30
pubmed: 10592173
Cancer Immunol Immunother. 2021 Jul;70(7):1811-1820
pubmed: 33389014
BMC Cancer. 2015 Oct 24;15:778
pubmed: 26497896
Science. 2018 Apr 20;360(6386):331-335
pubmed: 29674595
Altern Lab Anim. 2010 Dec;38 Suppl 1:11-3
pubmed: 21275477
J Hematol Oncol. 2020 Dec 4;13(1):166
pubmed: 33276803
Neuro Oncol. 2013 Jan;15(1):97-103
pubmed: 23099653
Acta Neuropathol Commun. 2018 Jun 28;6(1):51
pubmed: 29954445
J Immunol. 2012 Aug 15;189(4):1920-7
pubmed: 22802421
J Neurosurg Pediatr. 2019 Mar 1;23(3):261-273
pubmed: 30835699
NPJ Precis Oncol. 2021 Oct 8;5(1):90
pubmed: 34625644
Anticancer Res. 1997 Sep-Oct;17(5A):3217-24
pubmed: 9413151
Clin Cancer Res. 2014 Nov 15;20(22):5630-40
pubmed: 25398846
Nat Rev Neurosci. 2009 Jan;10(1):70-8
pubmed: 19050713
Cancer Cell. 2020 Jul 13;38(1):44-59.e9
pubmed: 32663469
Cell Rep. 2021 Jul 27;36(4):109442
pubmed: 34320340
Clin Cancer Res. 1995 May;1(5):501-7
pubmed: 9816009
Nat Med. 2018 Sep;24(9):1459-1468
pubmed: 30104766
Cell. 2015 May 21;161(5):1187-1201
pubmed: 26000487
J Pathol Transl Med. 2016 Nov;50(6):411-418
pubmed: 27809448
J Clin Oncol. 2015 May 10;33(14):1543-50
pubmed: 25823737
Cancer Immunol Immunother. 2020 Sep;69(9):1751-1766
pubmed: 32335702
Transl Res. 2017 Nov;189:93-104
pubmed: 28746860
Methods Mol Biol. 2020;2055:245-272
pubmed: 31502156
Nat Commun. 2021 Nov 18;12(1):6689
pubmed: 34795224
Nat Biotechnol. 2015 May;33(5):495-502
pubmed: 25867923
Neuro Oncol. 2019 Jan 1;21(1):83-94
pubmed: 30169876
Neuro Oncol. 2017 Feb 1;19(2):153-161
pubmed: 27282398

Auteurs

Jacob S Rozowsky (JS)

Princess Máxima Center for Pediatric Oncology, Utrecht, Netherlands.

Joyce I Meesters-Ensing (JI)

Princess Máxima Center for Pediatric Oncology, Utrecht, Netherlands.

Julie A S Lammers (JAS)

Princess Máxima Center for Pediatric Oncology, Utrecht, Netherlands.

Muriël L Belle (ML)

Princess Máxima Center for Pediatric Oncology, Utrecht, Netherlands.

Stefan Nierkens (S)

Princess Máxima Center for Pediatric Oncology, Utrecht, Netherlands.
Center for Translational Immunology, University Medical Center Utrecht, Utrecht, Netherlands.

Mariëtte E G Kranendonk (MEG)

Princess Máxima Center for Pediatric Oncology, Utrecht, Netherlands.

Lennart A Kester (LA)

Princess Máxima Center for Pediatric Oncology, Utrecht, Netherlands.

Friso G Calkoen (FG)

Princess Máxima Center for Pediatric Oncology, Utrecht, Netherlands.

Jasper van der Lugt (J)

Princess Máxima Center for Pediatric Oncology, Utrecht, Netherlands.

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