Raman Spectroscopy-A Novel Method for Identification and Characterization of Microbes on a Single-Cell Level in Clinical Settings.
Raman spectroscopy
Raman tweezers
antimicrobial resistance
diagnostics
identification of microorganisms
magnetic beads
microfluidic devices
Journal
Frontiers in cellular and infection microbiology
ISSN: 2235-2988
Titre abrégé: Front Cell Infect Microbiol
Pays: Switzerland
ID NLM: 101585359
Informations de publication
Date de publication:
2022
2022
Historique:
received:
31
01
2022
accepted:
07
03
2022
entrez:
9
5
2022
pubmed:
10
5
2022
medline:
11
5
2022
Statut:
epublish
Résumé
Rapid and accurate identification of pathogens causing infections is one of the biggest challenges in medicine. Timely identification of causative agents and their antimicrobial resistance profile can significantly improve the management of infection, lower costs for healthcare, mitigate ever-growing antimicrobial resistance and in many cases, save lives. Raman spectroscopy was shown to be a useful-quick, non-invasive, and non-destructive -tool for identifying microbes from solid and liquid media. Modifications of Raman spectroscopy and/or pretreatment of samples allow single-cell analyses and identification of microbes from various samples. It was shown that those non-culture-based approaches could also detect antimicrobial resistance. Moreover, recent studies suggest that a combination of Raman spectroscopy with optical tweezers has the potential to identify microbes directly from human body fluids. This review aims to summarize recent advances in non-culture-based approaches of identification of microbes and their virulence factors, including antimicrobial resistance, using methods based on Raman spectroscopy in the context of possible use in the future point-of-care diagnostic process.
Identifiants
pubmed: 35531343
doi: 10.3389/fcimb.2022.866463
pmc: PMC9072635
doi:
Substances chimiques
Anti-Infective Agents
0
Virulence Factors
0
Types de publication
Journal Article
Review
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
866463Informations de copyright
Copyright © 2022 Rebrosova, Samek, Kizovsky, Bernatova, Hola and Ruzicka.
Déclaration de conflit d'intérêts
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Références
Clin Microbiol Infect. 2012 Feb;18(2):147-52
pubmed: 21854500
Lasers Med Sci. 2021 Mar;36(2):289-302
pubmed: 32500291
Mikrochim Acta. 2019 Jun 27;186(7):475
pubmed: 31250223
Analyst. 2012 Apr 21;137(8):1807-14
pubmed: 22382127
Anal Bioanal Chem. 2019 May;411(14):3165-3177
pubmed: 30989268
Curr Med Chem. 2015;22(14):1710-8
pubmed: 25760086
J Bacteriol. 2007 Jul;189(13):4681-7
pubmed: 17468248
Analyst. 2016 Aug 7;141(15):4558-61
pubmed: 27349704
Clin Microbiol Infect. 2010 Nov;16(11):1620-5
pubmed: 20545958
Nanoscale Res Lett. 2014 Jun 27;9(1):324
pubmed: 25024685
RSC Adv. 2018 Jul 20;8(46):25888-25908
pubmed: 35541973
Sensors (Basel). 2019 Sep 21;19(19):
pubmed: 31546587
Front Cell Infect Microbiol. 2020 Nov 11;10:572909
pubmed: 33262954
J Med Microbiol. 2012 Nov;61(Pt 11):1511-1516
pubmed: 22837218
Nat Protoc. 2016 Apr;11(4):664-87
pubmed: 26963630
Front Microbiol. 2018 Aug 06;9:1744
pubmed: 30127772
J Microbiol Methods. 2014 Oct;105:98-101
pubmed: 25063679
Sci Rep. 2018 Mar 26;8(1):5163
pubmed: 29581560
J Biophotonics. 2020 May;13(5):e201960227
pubmed: 32022438
Clin Microbiol Infect. 2011 Sep;17(9):1359-65
pubmed: 20946411
Front Public Health. 2014 Jul 31;2:103
pubmed: 25133139
Sci Rep. 2019 Dec 24;9(1):19795
pubmed: 31875014
Adv Drug Deliv Rev. 2015 Jul 15;89:105-20
pubmed: 25895619
Phys Chem Chem Phys. 2007 Mar 21;9(11):1276-91
pubmed: 17347700
Clin Chim Acta. 2016 Oct 1;461:69-75
pubmed: 27485760
Biomicrofluidics. 2015 Aug 11;9(4):044118
pubmed: 26339318
Anal Chim Acta. 2017 May 8;966:11-33
pubmed: 28372723
Sci Rep. 2017 Jul 19;7(1):5791
pubmed: 28725026
Methods Mol Biol. 2012;881:187-211
pubmed: 22639215
Int J Antimicrob Agents. 2015 Dec;46 Suppl 1:S35-9
pubmed: 26612228
Antimicrob Agents Chemother. 2014;58(3):1302-14
pubmed: 24295982
Anal Bioanal Chem. 2013 Mar;405(8):2743-6
pubmed: 23371531
Anal Chem. 2017 Dec 5;89(23):12666-12673
pubmed: 28985467
J Microbiol Methods. 2015 Feb;109:67-73
pubmed: 25500131
Exp Ther Med. 2019 Dec;18(6):4865-4873
pubmed: 31819764
Front Microbiol. 2019 Nov 06;10:2582
pubmed: 31781074
Eur J Clin Microbiol Infect Dis. 2019 Jun;38(6):1059-1070
pubmed: 30834996
Anal Chem. 2013 Nov 19;85(22):10717-24
pubmed: 24125497
Appl Environ Microbiol. 2001 Apr;67(4):1461-9
pubmed: 11282591
Microorganisms. 2019 May 13;7(5):
pubmed: 31086084
Micromachines (Basel). 2019 Jun 24;10(6):
pubmed: 31238556
Front Microbiol. 2015 Aug 05;6:791
pubmed: 26300860
Appl Spectrosc. 2013 Aug;67(8):813-28
pubmed: 23876720
BMC Biol. 2017 Oct 19;15(1):91
pubmed: 29052511
Nat Rev Microbiol. 2008 May;6(5):339-48
pubmed: 18414500
Sensors (Basel). 2018 Nov 22;18(12):
pubmed: 30469521
Microb Biotechnol. 2022 Feb;15(2):395-414
pubmed: 33645897
Int J Infect Dis. 2016 Nov;52:37-42
pubmed: 27658644
Anal Chim Acta. 2022 Jan 25;1191:339292
pubmed: 35033248
Anal Bioanal Chem. 2015 Nov;407(27):8333-41
pubmed: 26041453
Anal Bioanal Chem. 2021 Aug;413(20):5193-5200
pubmed: 34215913
Front Microbiol. 2017 Sep 28;8:1824
pubmed: 29033904
Int J Nanomedicine. 2021 Feb 11;16:941-950
pubmed: 33603361
Anal Chem. 2015 Jan 20;87(2):937-43
pubmed: 25517827
Molecules. 2013 Oct 24;18(11):13188-99
pubmed: 24284484
Analyst. 2013 Jul 21;138(14):4006-14
pubmed: 23608738
Sensors (Basel). 2010;10(9):8635-51
pubmed: 22163676
Trends Microbiol. 2017 May;25(5):413-424
pubmed: 28188076
Front Chem. 2021 Apr 09;9:651757
pubmed: 33898392
Sci Rep. 2021 Nov 15;11(1):22222
pubmed: 34782647
J Clin Microbiol. 2020 Jun 24;58(7):
pubmed: 32376666
Diagn Microbiol Infect Dis. 2011 Aug;70(4):544-8
pubmed: 21767712
PeerJ. 2020 Mar 30;8:e8535
pubmed: 32266110
Appl Microbiol Biotechnol. 2006 Dec;73(3):495-504
pubmed: 17063328
Biosens Bioelectron. 2018 Jan 15;99:416-423
pubmed: 28810232
J Clin Microbiol. 2003 Jan;41(1):324-9
pubmed: 12517868
Front Microbiol. 2019 Apr 16;10:620
pubmed: 31040829
Sci Rep. 2017 Jun 13;7(1):3434
pubmed: 28611406
Anal Chem. 2009 May 1;81(9):3227-38
pubmed: 19320490
Eur J Clin Microbiol Infect Dis. 2017 Jan;36(1):81-89
pubmed: 27638006
Int J Mol Sci. 2014 Dec 22;15(12):23924-35
pubmed: 25535081
Eur J Clin Microbiol Infect Dis. 2015 Feb;34(2):405-13
pubmed: 25252627
Methods Mol Med. 2004;94:393-427
pubmed: 14959841
Sensors (Basel). 2015 Nov 24;15(11):29635-47
pubmed: 26610516
PLoS One. 2014 Feb 14;9(2):e87870
pubmed: 24551067
Clin Microbiol Infect. 2004 Mar;10(3):190-212
pubmed: 15008940
J Biomed Opt. 2008 Nov-Dec;13(6):064004
pubmed: 19123651
Front Bioeng Biotechnol. 2019 Sep 27;7:233
pubmed: 31612129
Cancer Metastasis Rev. 2018 Dec;37(4):691-717
pubmed: 30569241
Anal Bioanal Chem. 2022 Feb;414(4):1481-1492
pubmed: 34982178
ACS Nano. 2018 Jul 24;12(7):7100-7108
pubmed: 29920065
J Biophotonics. 2014 Apr;7(3-4):232-40
pubmed: 24638955
Sci Rep. 2017 Nov 1;7(1):14846
pubmed: 29093473
NPJ Regen Med. 2017 May 15;2:12
pubmed: 29302348
Front Microbiol. 2021 Jul 19;12:683580
pubmed: 34349740
ACS Omega. 2021 Jun 15;6(25):16273-16279
pubmed: 34235297
Anal Bioanal Chem. 2015 Nov;407(27):8233-41
pubmed: 26297460
PLoS Biol. 2016 Aug 19;14(8):e1002533
pubmed: 27541692
Clin Microbiol Infect. 2014 Oct;20(10):1001-6
pubmed: 24698361
Sci Rep. 2017 Feb 17;7:42930
pubmed: 28211526
Adv Drug Deliv Rev. 2015 Jul 15;89:121-34
pubmed: 25809988
Anal Chem. 2002 Oct 1;74(19):4895-904
pubmed: 12380810
Diagnostics (Basel). 2019 May 03;9(2):
pubmed: 31058811
J Microbiol Methods. 2000 Sep;42(1):29-38
pubmed: 11000428
Anal Bioanal Chem. 2017 Apr;409(11):3043-3054
pubmed: 28235996
Philos Trans R Soc Lond B Biol Sci. 2015 Oct 5;370(1679):
pubmed: 26370936
Water Res. 2014 Jan 1;48:179-89
pubmed: 24103393
J Biomed Opt. 2015 May;20(5):051038
pubmed: 25734616
Clin Infect Dis. 2007 Apr 15;44(8):1108-14
pubmed: 17366460
Biology (Basel). 2021 Jan 12;10(1):
pubmed: 33445707
Sci Rep. 2018 Jun 20;8(1):9417
pubmed: 29925892
Analyst. 2009 Oct;134(10):2123-7
pubmed: 19768224
J Microbiol Methods. 2006 Jul;66(1):63-72
pubmed: 16325947
Proc Natl Acad Sci U S A. 1997 May 13;94(10):4853-60
pubmed: 9144154
Sensors (Basel). 2018 May 18;18(5):
pubmed: 29783713
Folia Microbiol (Praha). 2014 Sep;59(5):447-53
pubmed: 24895050
Diagnostics (Basel). 2020 Jun 26;10(6):
pubmed: 32604919
Lab Chip. 2012 Mar 21;12(6):1157-63
pubmed: 22318368
J Microbiol Methods. 2015 Feb;109:79-83
pubmed: 25533216
Future Microbiol. 2019 Apr;14:509-517
pubmed: 31025881
Electrophoresis. 2021 Mar;42(5):539-564
pubmed: 33191521
Anal Chem. 2008 Mar 15;80(6):2180-7
pubmed: 18260656
Appl Opt. 2007 Apr 1;46(10):1726-34
pubmed: 17356615