Temporal variation in bacterial community profile on patients' bedsheets in a primary healthcare unit.

Amplicon sequencing Bacterial diversity Patients’ bedsheets Primary healthcare unit Seasonal variation

Journal

Archives of microbiology
ISSN: 1432-072X
Titre abrégé: Arch Microbiol
Pays: Germany
ID NLM: 0410427

Informations de publication

Date de publication:
10 May 2022
Historique:
received: 27 01 2022
accepted: 13 04 2022
revised: 10 03 2022
entrez: 9 5 2022
pubmed: 10 5 2022
medline: 12 5 2022
Statut: epublish

Résumé

Fabrics serve as fomites in spreading nosocomial infections. As a patient is in close contact with bedsheets, it is important to assess the seasonal variation in bacterial diversity on these in healthcare units. The study was conducted to characterise the bacterial diversity on patients' bedsheets across 7 months in a primary healthcare unit. Polyester-cotton blend fabric was stitched on bedsheets, and temporal dynamics of bacterial communities was assessed from May to November 2019. qPCR and amplicon sequencing of 16S rRNA gene was performed for profiling of bacterial community. Results revealed the dominance of Bacillota followed by Pseudomonadota, and Actinomycetota. A seasonal variation was observed in the bacterial load, with maximum values in June. This indicates the impact of environmental conditions on bacterial abundance and composition on fabrics in healthcare unit. The presence of priority pathogens on the patient bedsheets is a human health concern reiterating the need for season-specific laundering protocol.

Identifiants

pubmed: 35534776
doi: 10.1007/s00203-022-02921-x
pii: 10.1007/s00203-022-02921-x
doi:

Substances chimiques

RNA, Ribosomal, 16S 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

308

Subventions

Organisme : Indian Institute of Technology Delhi
ID : MI1798G
Organisme : Indian Institute of Technology Delhi
ID : MI1798G
Organisme : The Wellcome Trust DBT India Alliance
ID : IA/E/17/1/503700
Organisme : Department of Science and Technology, Ministry of Science and Technology
ID : INSPIRE fellowship IF160213
Organisme : University Grants Commission
ID : fellowship

Informations de copyright

© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Références

Beggs C, Knibbs LD, Johnson GR, Morawska L (2015) Environmental contamination and hospital-acquired infection: factors that are easily overlooked. Indoor Air 25:462–474
doi: 10.1111/ina.12170
Brandwein M, Katz I, Katz A, Kohen R (2019) Beyond the gut: skin microbiome compositional changes are associated with BMI. Hum Microbiome J 13:100063
doi: 10.1016/j.humic.2019.100063
Bureau-Chalot F, Piednoir E, Camus J, Bajolet O (2004) Microbiologic quality of linen and linen rooms in short-term care units. J Hosp Infect 56:329–331
doi: 10.1016/j.jhin.2004.01.010
Callahan BJ, McMurdie PJ, Rosen MJ, Han AW, Johnson AJ, Holmes SP (2016) DADA2: high-resolution sample inference from Illumina amplicon data. Nat Methods 13:581–583
doi: 10.1038/nmeth.3869
Chinn RY, Sehulster L (2003) Guidelines for environmental infection control in health-care facilities; recommendations of CDC and healthcare infection control practices advisory committee (HICPAC) https://www.cdc.gov/infectioncontrol/pdf/guidelines/environmental-guidelines-P.pdf . Accessed 19 Jan 2022
Chong J, Liu P, Zhou G, Xia J (2020) Using microbiomeanalyst for comprehensive statistical, functional, and meta-analysis of microbiome data. Nat Protoc 15:799–821
doi: 10.1038/s41596-019-0264-1
Chopyk J, Akrami K, Bavly T, Shin JH, Schwanemann LK, Ly M, Kalia R, Xu Y, Kelley ST, Malhotra A, Torriani FJ (2020) Temporal variations in bacterial community diversity and composition throughout intensive care unit renovations. Microbiome 8:1–5
doi: 10.1186/s40168-020-00852-7
Cosseau C, Romano-Bertrand S, Duplan H, Lucas O, Ingrassia I, Pigasse C, Roques C, Jumas-Bilak E (2016) Proteobacteria from the human skin microbiota: species-level diversity and hypotheses. One Health 2:33–41
doi: 10.1016/j.onehlt.2016.02.002
Das A, Alagirusamy R (2010) Tactile aspects of clothing comfort. In: Das A, Alagirusamy R (eds) Science in clothing comfort. Woodhead Pub. India. New Delhi, India
Denton M, Wilcox MH, Parnell P, Green D, Keer V, Hawkey PM, Evans I, Murphy P (2004) Role of environmental cleaning in controlling an outbreak of Acinetobacter baumannii on a neurosurgical intensive care unit. J Hosp Infect 56:106–110
doi: 10.1016/j.jhin.2003.10.017
Dhariwal A, Chong J, Habib S, King IL, Agellon LB, Xia J (2017) MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data. Nucleic Acids Res 45:180–188
doi: 10.1093/nar/gkx295
Gao Z, Tseng CH, Pei Z, Blaser MJ (2007) Molecular analysis of human forearm superficial skin bacterial biota. Proc Natl Acad Sci 104:2927–2932
doi: 10.1073/pnas.0607077104
Gastmeier P, Schwab F, Bärwolff S, Rüden H, Grundmann H (2006) Correlation between the genetic diversity of nosocomial pathogens and their survival time in intensive care units. J Hosp Infect 62:181–186
doi: 10.1016/j.jhin.2005.08.010
Guimarães AC, Donalisio MR, Santiago TH, Freire JB (2011) Óbitos associados à infecção hospitalar, ocorridos em um hospital geral de Sumaré-SP, Brasil. Rev Bras Enferm 64:864–869
doi: 10.1590/S0034-71672011000500010
Gupta A, Karyakarte R, Joshi S, Das R, Jani K, Shouche Y, Sharma A (2021) Nasopharyngeal microbiome reveals the prevalence of opportunistic pathogens in SARS-CoV-2 infected individuals and their association with host types. Microbes Infect 24:104880
doi: 10.1016/j.micinf.2021.104880
Hassan MZ, Sturm-Ramirez K, Rahman MZ, Hossain K, Aleem MA, Bhuiyan MU, Islam MM, Rahman M, Gurley ES (2019) Contamination of hospital surfaces with respiratory pathogens in Bangladesh. PLoS ONE 14:0224065
Jani K, Dhotre D, Bandal J, Shouche Y, Suryavanshi M, Rale V, Sharma A (2018) World’s largest mass bathing event influences the bacterial communities of Godavari, a holy river of India. Microb Ecol 76:706–718
doi: 10.1007/s00248-018-1169-1
Kniehl E, Becker A, Forster DH (2005) Bed, bath and beyond: pitfalls in prompt eradication of methicillin-resistant Staphylococcus aureus carrier status in healthcare workers. J Hosp Infect 59:180–187
doi: 10.1016/j.jhin.2004.06.016
Lax S, Smith D, Sangwan N, Handley K, Larsen P, Richardson M, Gilbert JA (2017) Colonization and succession of hospital-associated microbiota. Sci Transl Med 9:1–11
doi: 10.1126/scitranslmed.aah6500
Li K, Bihan M, Yooseph S, Methe BA (2012) Analyses of the microbial diversity across the human microbiome. PLoS ONE 7:32118
doi: 10.1371/journal.pone.0032118
Neely AN (2000) A survey of gram-negative bacteria survival on hospital fabrics and plastics. J Burn Care Res 21:523–527
doi: 10.1097/00004630-200021060-00009
Oberauner L, Zachow C, Lackner S, Högenauer C, Smolle KH, Berg G (2013) The ignored diversity: complex bacterial communities in intensive care units revealed by 16S pyrosequencing. Sci Rep 3:1–2
doi: 10.1038/srep01413
Oh J, Byrd AL, Park M, Kong HH, Segre JA (2016) NISC comparative sequencing program. Temporal stability of the human skin microbiome. Cell 165:854–866
doi: 10.1016/j.cell.2016.04.008
Oren A, Garrity GM (2021) Valid publication of the names of forty-two phyla of prokaryotes. IJSEM. https://doi.org/10.1099/ijsem.0.005056
doi: 10.1099/ijsem.0.005056 pubmed: 34928785 pmcid: 8612517
Panagea S, Winstanley C, Walshaw MJ, Ledson MJ, Hart CA (2005) Environmental contamination with an epidemic strain of Pseudomonas aeruginosa in a liverpool cystic fibrosis centre, and study of its survival on dry surfaces. J Hosp Infect 59:102–107
doi: 10.1016/j.jhin.2004.09.018
Rizzatti G, Lopetuso LR, Gibiino G, Binda C, Gasbarrini A (2017) Proteobacteria: a common factor in human diseases. BioMed Res Int 2017:1–7. https://doi.org/10.1155/2017/9351507
doi: 10.1155/2017/9351507
Roberts RR, Scott RD, Cordell R, Solomon SL, Steele L, Kampe LM, Trick WE, Weinstein RA (2003) The use of economic modeling to determine the hospital costs associated with nosocomial infections. Clin Infect Dis 36:1424–1432
doi: 10.1086/375061
Ruiz-Gil T, Acuna JJ, Fujiyoshi S, Tanaka D, Noda J, Maruyama F, Jorquera MA (2020) Airborne bacterial communities of outdoor environments and their associated influencing factors. Environ Int 145:106156
doi: 10.1016/j.envint.2020.106156
Segata N, Waldron L, Ballarini A, Narasimhan V, Jousson O, Huttenhower C (2012) Metagenomic microbial community profiling using unique clade-specific marker genes. Nat Methods 9:811–814
doi: 10.1038/nmeth.2066
Shams AM, Rose LJ, Edwards JR, Cali S, Harris AD, Jacob JT, LaFae A, Pineles LL, Thom KA, McDonald LC, Arduino MJ (2016) Assessment of the overall and multidrug-resistant organism bioburden on environmental surfaces in healthcare facilities. Infect Cont Hosp Epidemiol 37:1426–1432
doi: 10.1017/ice.2016.198
Shiomori T, Miyamoto H, Makishima K, Yoshida M, Fujiyoshi T, Udaka T, Inaba T, Hiraki N (2002) Evaluation of bedmaking-related airborne and surface methicillin-resistant Staphylococcus aureus contamination. J Hosp Infect 50:30–35
doi: 10.1053/jhin.2001.1136
Shobo CO, Alisoltani A, Abia AL, Mtshali PS, Ismail A, Zishiri O, Horn JD, Brysiewicz P, Essack SY, Bester LA (2020) Bacterial diversity and functional profile of microbial populations on surfaces in public hospital environments in South Africa: a high throughput metagenomic analysis. Sci Total Environ 719:137360
doi: 10.1016/j.scitotenv.2020.137360
Szostak-Kotowa J (2004) Biodeterioration of textiles. Int Biodeter Biodegr 53:165–170
doi: 10.1016/S0964-8305(03)00090-8
Torsvik V, Øvreås L (2002) Microbial diversity and function in soil: from genes to ecosystems. Curr Opin Microbiol 5:240–245
doi: 10.1016/S1369-5274(02)00324-7
Tuan NN, Chang YC, Yu CP, Huang SL (2014) Multiple approaches to characterize the microbial community in a thermophilic anaerobic digester running on swine manure: a case study. Microbiol Res 169:717–724
doi: 10.1016/j.micres.2014.02.003
Varshney S, Sain A, Anand G, Gupta D, Sharma S (2019) A robust method for nucleic acid extraction from fabrics to study bacterial diversity. J Biosci 44:1–4
doi: 10.1007/s12038-019-9935-x
Varshney S, Sharma S, Gupta D (2021) Surveillance of bacterial load and multi-drug resistant bacteria on bedsheets in a primary health care unit. Int J Environ Health Res. https://doi.org/10.1080/09603123.2021.1935780
doi: 10.1080/09603123.2021.1935780 pubmed: 34142921
Yano R, Shimoda T, Watanabe R, Kuroki Y, Okubo T, Nakamura S, Matsuo J, Yoshimura S, Yamaguchi H (2017) Diversity changes of microbial communities into hospital surface environments. J Infect Chemo 23:439–445
doi: 10.1016/j.jiac.2017.03.016

Auteurs

Swati Varshney (S)

Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology Delhi, New Delhi, 110016, India.

Swapnil Kajale (S)

DBT-National Centre for Cell Science, Pune, Maharashtra, 411007, India.

Shivani Khatri (S)

Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology Delhi, New Delhi, 110016, India.

Deepti Gupta (D)

Department of Textile and Fibre Engineering, Indian Institute of Technology Delhi, New Delhi, 110016, India.

Avinash Sharma (A)

DBT-National Centre for Cell Science, Pune, Maharashtra, 411007, India. avinash@nccs.res.in.

Shilpi Sharma (S)

Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology Delhi, New Delhi, 110016, India. shilpi@dbeb.iitd.ac.in.

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