Quantification of vascular networks in photoacoustic mesoscopy.
Photoacoustic imaging
Segmentation
Topology
Vasculature
Journal
Photoacoustics
ISSN: 2213-5979
Titre abrégé: Photoacoustics
Pays: Germany
ID NLM: 101622604
Informations de publication
Date de publication:
Jun 2022
Jun 2022
Historique:
entrez:
16
5
2022
pubmed:
17
5
2022
medline:
17
5
2022
Statut:
epublish
Résumé
Mesoscopic photoacoustic imaging (PAI) enables non-invasive visualisation of tumour vasculature. The visual or semi-quantitative 2D measurements typically applied to mesoscopic PAI data fail to capture the 3D vessel network complexity and lack robust ground truths for assessment of accuracy. Here, we developed a pipeline for quantifying 3D vascular networks captured using mesoscopic PAI and tested the preservation of blood volume and network structure with topological data analysis. Ground truth data of
Identifiants
pubmed: 35574188
doi: 10.1016/j.pacs.2022.100357
pii: S2213-5979(22)00026-X
pmc: PMC9095888
doi:
Types de publication
Journal Article
Langues
eng
Pagination
100357Subventions
Organisme : Wellcome Trust
Pays : United Kingdom
Informations de copyright
© 2022 The Authors.
Déclaration de conflit d'intérêts
The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: Sarah Bohndiek reports a relationship with EPFL Center for Biomedical Imaging that includes: speaking and lecture fees. Sarah Bohndiek reports a relationship with PreXion Inc that includes: funding grants. Sarah Bohndiek reports a relationship with iThera Medical GmbH that includes: non-financial support. The other authors have no conflict of interest related to the present manuscript to disclose.
Références
Int J Cancer. 2016 Aug 15;139(4):729-35
pubmed: 26934471
Sci Adv. 2022 Jun 10;8(23):eabm2456
pubmed: 35687679
Photoacoustics. 2018 Nov 23;13:25-32
pubmed: 30555784
Cell. 2016 Sep 22;167(1):260-274.e22
pubmed: 27641504
Curr Opin Neurobiol. 2012 Feb;22(1):138-43
pubmed: 21925871
Microcirculation. 2019 Jul;26(5):e12520
pubmed: 30548558
Nat Methods. 2019 Dec;16(12):1226-1232
pubmed: 31570887
Opt Lett. 2014 Jul 1;39(13):3911-4
pubmed: 24978769
Br J Cancer. 2018 Apr;118(8):1098-1106
pubmed: 29576623
Cancer Biol Ther. 2017 Feb;18(2):101-105
pubmed: 28045569
J Biomed Opt. 2022 Apr;27(8):
pubmed: 35380031
Biochim Biophys Acta. 2016 Aug;1866(1):76-86
pubmed: 27343712
Dis Model Mech. 2019 Jul 16;12(7):
pubmed: 31337635
Vascul Pharmacol. 2019 Jan;112:2-7
pubmed: 30248380
Cell. 2011 Mar 4;144(5):646-74
pubmed: 21376230
Interface Focus. 2011 Aug 6;1(4):602-31
pubmed: 22866233
Nat Methods. 2012 Jun 28;9(7):676-82
pubmed: 22743772
Nat Biotechnol. 2005 Mar;23(3):313-20
pubmed: 15765087
Annu Int Conf IEEE Eng Med Biol Soc. 2016 Aug;2016:3883-3886
pubmed: 28269134
Netw Neurosci. 2019 Jul 01;3(3):674-694
pubmed: 31410373
J Nucl Med. 2017 May;58(5):807-814
pubmed: 28126890
Organogenesis. 2009 Oct;5(4):227-30
pubmed: 20539742
Cancer Microenviron. 2013 Apr;6(1):1-17
pubmed: 22467426
Nat Methods. 2010 Aug;7(8):603-14
pubmed: 20676081
Opt Lett. 2013 Jul 15;38(14):2472-4
pubmed: 23939084
Clin Exp Metastasis. 2012 Oct;29(7):657-62
pubmed: 22692562
Med Image Anal. 1998 Jun;2(2):143-68
pubmed: 10646760
J Natl Cancer Inst. 2007 Oct 3;99(19):1441-54
pubmed: 17895480
Adv Sci (Weinh). 2021 May 02;8(13):2004226
pubmed: 34258153
Nat Methods. 2016 Jul 28;13(8):627-38
pubmed: 27467726
Nat Biomed Eng. 2020 Mar;4(3):286-297
pubmed: 32165736
J Biomed Opt. 2010 Mar-Apr;15(2):021314
pubmed: 20459236
Nat Biomed Eng. 2019 May;3(5):354-370
pubmed: 30988470
Theranostics. 2018 Mar 7;8(8):2117-2133
pubmed: 29721067
Comput Methods Programs Biomed. 2018 May;158:71-91
pubmed: 29544791
Comput Med Imaging Graph. 2021 Apr;89:101840
pubmed: 33548822
Phys Med Biol. 2016 Nov 21;61(22):7994-8009
pubmed: 27779138
Neoplasia. 2015 Feb;17(2):208-14
pubmed: 25748240
Biomed Opt Express. 2019 Oct 29;10(11):5921-5939
pubmed: 31799055
J Theor Biol. 1968 Mar;18(3):280-99
pubmed: 5659071
Phys Med Biol. 2008 Aug 7;53(15):4203-12
pubmed: 18635896
Biomed Opt Express. 2018 Jun 04;9(7):2887-2904
pubmed: 29984073
Sci Rep. 2015 Nov 16;5:16534
pubmed: 26567707