Disordered-Ordered Protein Binary Classification by Circular Dichroism Spectroscopy.

CD spectroscopy disorder identifier disorder–order classification intrinsically disordered proteins machine learning protein secondary structure

Journal

Frontiers in molecular biosciences
ISSN: 2296-889X
Titre abrégé: Front Mol Biosci
Pays: Switzerland
ID NLM: 101653173

Informations de publication

Date de publication:
2022
Historique:
received: 26 01 2022
accepted: 24 03 2022
entrez: 20 5 2022
pubmed: 21 5 2022
medline: 21 5 2022
Statut: epublish

Résumé

Intrinsically disordered proteins lack a stable tertiary structure and form dynamic conformational ensembles due to their characteristic physicochemical properties and amino acid composition. They are abundant in nature and responsible for a large variety of cellular functions. While numerous bioinformatics tools have been developed for

Identifiants

pubmed: 35591946
doi: 10.3389/fmolb.2022.863141
pii: 863141
pmc: PMC9110821
doi:

Types de publication

Journal Article

Langues

eng

Pagination

863141

Informations de copyright

Copyright © 2022 Micsonai, Moussong, Murvai, Tantos, Tőke, Réfrégiers, Wien and Kardos.

Déclaration de conflit d'intérêts

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Références

Chem Rev. 2014 Jul 9;114(13):6561-88
pubmed: 24739139
Biophys J. 2018 Mar 13;114(5):1067-1079
pubmed: 29539394
Proc Natl Acad Sci U S A. 2015 Jun 16;112(24):E3095-103
pubmed: 26038575
Biochim Biophys Acta. 2004 May 6;1698(2):131-53
pubmed: 15134647
EMBO Rep. 2021 Nov 4;22(11):e54046
pubmed: 34668287
Biochemistry. 1981 Jan 6;20(1):33-7
pubmed: 7470476
Biochim Biophys Acta. 1997 Apr 4;1338(2):161-85
pubmed: 9128135
Nucleic Acids Res. 2017 Jan 4;45(D1):D303-D307
pubmed: 27613420
Bioinformatics. 2002 Jan;18(1):211-2
pubmed: 11836237
Annu Rev Biophys. 2008;37:215-46
pubmed: 18573080
Nucleic Acids Res. 2022 Jan 7;50(D1):D480-D487
pubmed: 34850135
Biotechnol Adv. 2020 Sep - Oct;42:107573
pubmed: 32512220
Nature. 2021 Aug;596(7873):590-596
pubmed: 34293799
J Agric Food Chem. 2007 Jul 11;55(14):5445-51
pubmed: 17539659
J Mol Biol. 2004 Mar 26;337(3):635-45
pubmed: 15019783
Brief Bioinform. 2019 Jan 18;20(1):330-346
pubmed: 30657889
J Phys Chem B. 2015 Feb 19;119(7):2946-55
pubmed: 25625571
Biochemistry. 2011 Jul 5;50(26):5834-44
pubmed: 21634433
Prog Mol Biol Transl Sci. 2019;166:341-369
pubmed: 31521235
Anal Biochem. 2007 Jan 15;360(2):321-3
pubmed: 17129571
Protein Sci. 2013 Jun;22(6):851-8
pubmed: 23526461
Methods Mol Biol. 2021;2199:175-189
pubmed: 33125651
Nature. 2021 Aug;596(7873):583-589
pubmed: 34265844
Brief Bioinform. 2020 Sep 25;21(5):1509-1522
pubmed: 31616935
Angew Chem Int Ed Engl. 2021 May 3;60(19):10724-10729
pubmed: 33587794
Cells. 2020 Aug 07;9(8):
pubmed: 32784707
Nat Methods. 2021 May;18(5):472-481
pubmed: 33875885
Biochemistry (Mosc). 1999 Mar;64(3):250-66
pubmed: 10205295
J Phys Chem Lett. 2013 Oct 17;4(20):
pubmed: 24312701
Front Mol Biosci. 2015 Aug 05;2:45
pubmed: 26301226
Genome Inform Ser Workshop Genome Inform. 2000;11:161-71
pubmed: 11700597
Biochim Biophys Acta. 2005 Aug 10;1751(2):119-39
pubmed: 16027053
Annu Rev Biophys Biophys Chem. 1988;17:145-66
pubmed: 3293583
Int J Mol Sci. 2021 Jun 08;22(12):
pubmed: 34201246
Anal Biochem. 2000 Dec 15;287(2):252-60
pubmed: 11112271
Drug Discov Today. 2019 Jan;24(1):217-227
pubmed: 30278223
Methods Enzymol. 1973;27:675-735
pubmed: 4797940
Protein Sci. 2002 Apr;11(4):739-56
pubmed: 11910019
Nucleic Acids Res. 2018 Jul 2;46(W1):W315-W322
pubmed: 29893907
Nucleic Acids Res. 2013 Jul;41(Web Server issue):W417-21
pubmed: 23625965
Biochemistry. 2002 May 28;41(21):6573-82
pubmed: 12022860
Cell Mol Life Sci. 2015 Jan;72(1):137-51
pubmed: 24939692
J Mol Biol. 2002 Mar 22;317(2):291-308
pubmed: 11902844
Cell Mol Life Sci. 2003 Sep;60(9):1852-71
pubmed: 14523548

Auteurs

András Micsonai (A)

ELTE NAP Neuroimmunology Research Group, Department of Biochemistry, Institute of Biology, ELTE Eötvös Loránd University, Budapest, Hungary.

Éva Moussong (É)

ELTE NAP Neuroimmunology Research Group, Department of Biochemistry, Institute of Biology, ELTE Eötvös Loránd University, Budapest, Hungary.

Nikoletta Murvai (N)

Department of Biochemistry, Institute of Biology, ELTE Eötvös Loránd University, Budapest, Hungary.
Institute of Enzymology, Research Centre for Natural Sciences, Budapest, Hungary.

Ágnes Tantos (Á)

Institute of Enzymology, Research Centre for Natural Sciences, Budapest, Hungary.

Orsolya Tőke (O)

Laboratory for NMR Spectroscopy, Research Centre for Natural Sciences, Budapest, Hungary.

Matthieu Réfrégiers (M)

Synchrotron SOLEIL, Gif-sur-Yvette, France.
Centre de Biophysique Moléculaire, CNRS UPR4301, Orléans, France.

Frank Wien (F)

Synchrotron SOLEIL, Gif-sur-Yvette, France.

József Kardos (J)

ELTE NAP Neuroimmunology Research Group, Department of Biochemistry, Institute of Biology, ELTE Eötvös Loránd University, Budapest, Hungary.

Classifications MeSH