Engineering microbial consortia with rationally designed cellular interactions.


Journal

Current opinion in biotechnology
ISSN: 1879-0429
Titre abrégé: Curr Opin Biotechnol
Pays: England
ID NLM: 9100492

Informations de publication

Date de publication:
08 2022
Historique:
received: 06 12 2021
revised: 22 03 2022
accepted: 03 04 2022
pubmed: 25 5 2022
medline: 17 8 2022
entrez: 24 5 2022
Statut: ppublish

Résumé

Synthetic microbial consortia represent a frontier of synthetic biology that promises versatile engineering of cellular functions. They are primarily developed through the design and construction of cellular interactions that coordinate individual dynamics and generate collective behaviors. Here we review recent advances in the engineering of synthetic communities through cellular-interaction programming. We first examine fundamental building blocks for intercellular communication and unidirectional positive and negative interactions. We then recap the assembly of the building blocks for creating bidirectional interactions in two-species ecosystems, which is followed by the discussion of engineering toward complex communities with increasing species numbers, under spatial contexts, and via model-guided design. We conclude by summarizing major challenges and future opportunities of engineered microbial ecosystems.

Identifiants

pubmed: 35609504
pii: S0958-1669(22)00064-7
doi: 10.1016/j.copbio.2022.102730
pmc: PMC10129393
mid: NIHMS1893172
pii:
doi:

Types de publication

Journal Article Review Research Support, Non-U.S. Gov't Research Support, N.I.H., Extramural Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

102730

Subventions

Organisme : NIGMS NIH HHS
ID : R35 GM133579
Pays : United States

Informations de copyright

Copyright © 2022 Elsevier Ltd. All rights reserved.

Références

ACS Synth Biol. 2019 Sep 20;8(9):2051-2058
pubmed: 31361464
Crit Rev Biotechnol. 2021 May;41(3):317-338
pubmed: 33730938
Proc Natl Acad Sci U S A. 2018 Mar 20;115(12):2964-2969
pubmed: 29507236
Metab Eng. 2019 Sep;55:268-275
pubmed: 31401244
Annu Rev Biochem. 2021 Jun 20;90:221-244
pubmed: 33784178
Front Microbiol. 2012 Jun 05;3:203
pubmed: 22679443
Nature. 2011 Dec 18;481(7379):39-44
pubmed: 22178928
PLoS Comput Biol. 2016 Feb 01;12(2):e1004685
pubmed: 26829588
ACS Synth Biol. 2020 Jun 19;9(6):1328-1335
pubmed: 32369693
Sci Rep. 2017 Nov 22;7(1):16071
pubmed: 29167517
Nat Commun. 2020 Nov 27;11(1):6055
pubmed: 33247128
Proc Natl Acad Sci U S A. 2014 May 20;111(20):E2149-56
pubmed: 24778240
Nat Rev Microbiol. 2012 Jul 16;10(8):538-50
pubmed: 22796884
Cell Syst. 2019 Dec 18;9(6):521-533.e10
pubmed: 31838145
ACS Synth Biol. 2020 Sep 18;9(9):2588-2599
pubmed: 32786361
Mol Oral Microbiol. 2013 Apr;28(2):83-101
pubmed: 23253299
ACS Synth Biol. 2013 Mar 15;2(3):136-49
pubmed: 23656437
Nat Commun. 2021 Feb 8;12(1):853
pubmed: 33558556
Cell. 2016 Apr 21;165(3):620-30
pubmed: 27104979
Curr Biol. 2019 Jun 3;29(11):R521-R537
pubmed: 31163166
Curr Opin Microbiol. 2016 Jun;31:146-153
pubmed: 27084981
Curr Opin Biotechnol. 2020 Apr;62:228-238
pubmed: 31954367
Cell. 2009 Jun 26;137(7):1272-81
pubmed: 19563759
ACS Synth Biol. 2018 Apr 20;7(4):1095-1104
pubmed: 29584406
Curr Opin Biotechnol. 2012 Oct;23(5):798-802
pubmed: 22387100
Proc Natl Acad Sci U S A. 2007 Jun 19;104(25):10435-40
pubmed: 17551014
Nat Commun. 2018 Jul 11;9(1):2677
pubmed: 29992956
PLoS One. 2016 May 05;11(5):e0153679
pubmed: 27148743
ISME J. 2021 Oct;15(10):3019-3033
pubmed: 33953363
Biosens Bioelectron. 2013 Feb 15;40(1):368-76
pubmed: 22981411
PLoS Biol. 2019 Dec 12;17(12):e3000550
pubmed: 31830028
Wiley Interdiscip Rev Syst Biol Med. 2013 May-Jun;5(3):273-87
pubmed: 23443972
Nat Microbiol. 2017 Jun 12;2:17083
pubmed: 28604679
Sci Adv. 2018 Nov 21;4(11):eaau0695
pubmed: 30474057
mSystems. 2019 Aug 13;4(4):
pubmed: 31409662
Front Microbiol. 2020 Sep 04;11:2088
pubmed: 33013761
Microb Cell Fact. 2021 Nov 16;20(1):211
pubmed: 34784924
Nat Commun. 2020 May 15;11(1):2418
pubmed: 32415107
Crit Rev Microbiol. 2009;35(2):69-80
pubmed: 19514909
Nat Commun. 2021 Mar 30;12(1):1977
pubmed: 33785746
Science. 2019 Sep 6;365(6457):1045-1049
pubmed: 31488693
Nat Commun. 2019 Sep 11;10(1):4129
pubmed: 31511505
ACS Synth Biol. 2016 Sep 16;5(9):969-77
pubmed: 27172092
Elife. 2017 Nov 01;6:
pubmed: 29091031
Microb Cell Fact. 2019 Feb 8;18(1):35
pubmed: 30736778
Nat Chem Biol. 2022 Apr;18(4):394-402
pubmed: 35145274
Nat Rev Microbiol. 2020 Dec;18(12):731-743
pubmed: 32958892
Mol Syst Biol. 2008;4:187
pubmed: 18414488
Microbiology (Reading). 2001 Aug;147(Pt 8):2379-2387
pubmed: 11496014
Proc Natl Acad Sci U S A. 2016 May 31;113(22):6236-41
pubmed: 27194723
Mol Syst Biol. 2020 Jul;16(7):e9618
pubmed: 32672881
ACS Synth Biol. 2021 Feb 19;10(2):333-344
pubmed: 33496568
ACS Synth Biol. 2016 Aug 19;5(8):862-73
pubmed: 27439436
PLoS One. 2013;8(2):e57482
pubmed: 23468999
Trends Microbiol. 2020 Aug;28(8):633-643
pubmed: 32340782
Nat Chem Biol. 2019 Nov;15(11):1102-1109
pubmed: 31611703
Nat Commun. 2020 Jan 16;11(1):309
pubmed: 31949154
Cell Syst. 2021 Nov 17;12(11):1064-1078.e7
pubmed: 34469744
Science. 2015 Aug 28;349(6251):986-9
pubmed: 26315440
Nat Biotechnol. 2017 Mar;35(3):273-279
pubmed: 28191902
Metab Eng. 2015 Jul;30:7-15
pubmed: 25908185
Trends Biotechnol. 2008 Sep;26(9):483-9
pubmed: 18675483
Nat Microbiol. 2019 Sep;4(9):1430-1431
pubmed: 31439929
Nat Commun. 2020 Aug 24;11(1):4226
pubmed: 32839450
Nat Chem Biol. 2018 Aug;14(8):821-829
pubmed: 29942078
Proc Natl Acad Sci U S A. 2007 Feb 6;104(6):1877-82
pubmed: 17267602
Biotechnol J. 2020 Jun;15(6):e1900360
pubmed: 32034863
Biotechnol Bioeng. 2021 Jan;118(1):199-209
pubmed: 32915459
ACS Synth Biol. 2020 Feb 21;9(2):209-217
pubmed: 31944663
Nature. 2010 Jan 21;463(7279):326-30
pubmed: 20090747
ISME J. 2016 Sep;10(9):2077-84
pubmed: 26967105
Nature. 2005 Apr 28;434(7037):1130-4
pubmed: 15858574
Biotechnol Adv. 2019 Nov 1;37(6):107372
pubmed: 30880142
Front Microbiol. 2019 Mar 18;10:409
pubmed: 30936852
Curr Opin Microbiol. 2014 Apr;18:72-7
pubmed: 24632350
mSystems. 2021 Aug 31;:e0092521
pubmed: 34463582
Biotechnol Bioeng. 2021 Aug;118(8):3138-3149
pubmed: 34027999
BMC Syst Biol. 2015 Sep 16;9:59
pubmed: 26377684
ACS Synth Biol. 2019 Aug 16;8(8):1713-1722
pubmed: 31382741
Nat Commun. 2021 May 25;12(1):3139
pubmed: 34035266
Chem Soc Rev. 2014;43(20):6954-81
pubmed: 25017039
Front Bioeng Biotechnol. 2019 Apr 17;7:80
pubmed: 31058147
Cell. 2006 Apr 21;125(2):237-46
pubmed: 16630813
Mol Syst Biol. 2016 Jan 25;12(1):849
pubmed: 26814193
J Mol Biol. 2015 Nov 20;427(23):3754-65
pubmed: 26388411
Environ Microbiol. 2014 Jun;16(6):1472-81
pubmed: 24274586
Nat Rev Microbiol. 2014 May;12(5):381-90
pubmed: 24686414
Nucleic Acids Res. 1997 Mar 15;25(6):1203-10
pubmed: 9092630
Int J Mol Sci. 2019 Jul 12;20(14):
pubmed: 31336824
Nature. 2016 Aug 4;536(7614):81-85
pubmed: 27437587

Auteurs

Heather S Deter (HS)

Department of Bioengineering, University of Illinois Urbana-Champaign, Urbana, IL, USA; Intelligence Community Postdoctoral Research Fellowship Program, University of Illinois Urbana-Champaign, Urbana, IL, USA.

Ting Lu (T)

Department of Bioengineering, University of Illinois Urbana-Champaign, Urbana, IL, USA; Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL, USA; Department of Physics, University of Illinois Urbana-Champaign, Urbana, IL, USA; Center for Biophysics and Quantitative Biology, University of Illinois Urbana-Champaign, Urbana, IL, USA; National Center for Supercomputing Applications, Urbana, IL, USA. Electronic address: luting@illinois.edu.

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