Profile of the in silico secretome of the palm dieback pathogen, Fusarium oxysporum f. sp. albedinis, a fungus that puts natural oases at risk.
Journal
PloS one
ISSN: 1932-6203
Titre abrégé: PLoS One
Pays: United States
ID NLM: 101285081
Informations de publication
Date de publication:
2022
2022
Historique:
received:
15
11
2021
accepted:
28
04
2022
entrez:
26
5
2022
pubmed:
27
5
2022
medline:
31
5
2022
Statut:
epublish
Résumé
Understanding biotic changes that occur alongside climate change constitute a research priority of global significance. Here, we address a plant pathogen that poses a serious threat to life on natural oases, where climate change is already taking a toll and severely impacting human subsistence. Fusarium oxysporum f. sp. albedinis is a pathogen that causes dieback disease on date palms, a tree that provides several critical ecosystem services in natural oases; and consequently, of major importance in this vulnerable habitat. Here, we assess the current state of global pathogen spread, we annotate the genome of a sequenced pathogen strain isolated from the native range and we analyse its in silico secretome. The palm dieback pathogen secretes a large arsenal of effector candidates including a variety of toxins, a distinguished profile of secreted in xylem proteins (SIX) as well as an expanded protein family with an N-terminal conserved motif [SG]PC[KR]P that could be involved in interactions with host membranes. Using agrobiodiversity as a strategy to decrease pathogen infectivity, while providing short term resilient solutions, seems to be widely overcome by the pathogen. Hence, the urgent need for future mechanistic research on the palm dieback disease and a better understanding of pathogen genetic diversity.
Identifiants
pubmed: 35617325
doi: 10.1371/journal.pone.0260830
pii: PONE-D-21-36259
pmc: PMC9135196
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
e0260830Déclaration de conflit d'intérêts
The authors have declared that no competing interests exist.
Références
J Mol Biol. 2000 Jul 21;300(4):1005-16
pubmed: 10891285
Mol Plant Pathol. 2018 Sep;19(9):2094-2110
pubmed: 29569316
Phytopathology. 1997 Sep;87(9):899-909
pubmed: 18945060
Front Microbiol. 2016 Apr 27;7:600
pubmed: 27199930
FEMS Microbiol Lett. 2009 Nov;300(2):201-15
pubmed: 19799634
Genome Biol. 2010;11(7):R73
pubmed: 20626842
Annu Rev Phytopathol. 2018 Aug 25;56:21-40
pubmed: 29768136
Annu Rev Phytopathol. 2016 Aug 4;54:1-23
pubmed: 27215970
Front Microbiol. 2020 Sep 22;11:538032
pubmed: 33072007
PLoS One. 2012;7(1):e29847
pubmed: 22238666
Phytopathology. 2016 Feb;106(2):166-76
pubmed: 26524547
J Mol Biol. 2018 Jul 20;430(15):2237-2243
pubmed: 29258817
Curr Opin Plant Biol. 2012 Aug;15(4):477-82
pubmed: 22658704
Science. 2013 Aug 2;341(6145):508-13
pubmed: 23908229
Mol Plant Microbe Interact. 1997 Dec;10(9):1045-53
pubmed: 9390419
Ecology. 2010 May;91(5):1263-8
pubmed: 20503859
mSphere. 2017 Nov 22;2(6):
pubmed: 29202039
PLoS One. 2015 Jun 24;10(6):e0130534
pubmed: 26107498
BMC Genomics. 2013 Nov 20;14:807
pubmed: 24252298
Plant Cell. 2006 Jan;18(1):243-56
pubmed: 16326930
Plant J. 2018 Feb;93(4):651-663
pubmed: 29160935
Mol Plant Pathol. 2015 Feb;16(2):188-200
pubmed: 25040207
Front Plant Sci. 2015 Oct 21;6:872
pubmed: 26557126
Plant J. 2002 Nov;32(3):375-90
pubmed: 12410815
New Phytol. 2020 Feb;225(3):1134-1142
pubmed: 31134629
Front Plant Sci. 2013 Jul 11;4:228
pubmed: 23874344
Bioinformatics. 2009 Oct 15;25(20):2632-8
pubmed: 19671691
Int J Mol Sci. 2021 Mar 02;22(5):
pubmed: 33801529
PLoS One. 2012;7(1):e30169
pubmed: 22276154
Plant Cell. 2009 May;21(5):1573-91
pubmed: 19454732
Nucleic Acids Res. 2014 Jan;42(Database issue):D222-30
pubmed: 24288371
Plant Commun. 2020 Apr 24;1(4):100050
pubmed: 33367246
New Phytol. 2022 Jan;233(1):409-426
pubmed: 34231227
PLoS Pathog. 2011 Oct;7(10):e1002290
pubmed: 22022265
PLoS Genet. 2019 Oct 18;15(10):e1008223
pubmed: 31626626
PLoS One. 2019 Dec 4;14(12):e0225049
pubmed: 31800577
Mol Plant Microbe Interact. 2012 Feb;25(2):180-90
pubmed: 21942452
Nature. 2007 Nov 1;450(7166):115-8
pubmed: 17914356
New Phytol. 2022 Jan;233(1):11-14
pubmed: 34723389
Nat Ecol Evol. 2018 Jun;2(6):1000-1008
pubmed: 29686237
Sci Rep. 2017 Aug 22;7(1):9042
pubmed: 28831051
Microbiol Resour Announc. 2020 Jul 16;9(29):
pubmed: 32675183
Phytochemistry. 2006 Aug;67(16):1800-7
pubmed: 16430931
BMC Genomics. 2010 May 20;11:317
pubmed: 20487537
New Phytol. 2022 Jan;233(1):427-442
pubmed: 34227112
J Mol Biol. 2001 Jan 19;305(3):567-80
pubmed: 11152613
mBio. 2019 Mar 5;10(2):
pubmed: 30837342
EMBO Rep. 2000 Nov;1(5):411-5
pubmed: 11258480
J Biol Chem. 2001 Feb 9;276(6):4119-27
pubmed: 11053441
PLoS One. 2020 Nov 17;15(11):e0242477
pubmed: 33201909
PLoS Pathog. 2019 Mar 11;15(3):e1007620
pubmed: 30856238
Mol Microbiol. 2004 Sep;53(5):1373-83
pubmed: 15387816
Plant Signal Behav. 2019;14(2):1557008
pubmed: 30621489
Toxins (Basel). 2020 Apr 07;12(4):
pubmed: 32272814
Front Plant Sci. 2020 Jan 08;10:1626
pubmed: 31969889
J Plant Physiol. 2021 Jan;256:153324
pubmed: 33249386
Microorganisms. 2020 Apr 30;8(5):
pubmed: 32365808
Life Sci Alliance. 2019 Sep 30;2(5):
pubmed: 31570514
Curr Protoc Bioinformatics. 2020 Dec;72(1):e108
pubmed: 33315308
Nature. 2010 Mar 18;464(7287):367-73
pubmed: 20237561
Genome Biol Evol. 2015 May 19;7(6):1613-27
pubmed: 25994930
Sci Rep. 2021 Oct 5;11(1):19731
pubmed: 34611252
Plant J. 2007 Aug;51(4):681-92
pubmed: 17573802
Curr Opin Microbiol. 2007 Aug;10(4):332-8
pubmed: 17707688
Methods Mol Biol. 2017;1611:59-73
pubmed: 28451972
Nucleic Acids Res. 2018 Jul 2;46(W1):W95-W101
pubmed: 29771380
Proc Natl Acad Sci U S A. 2010 Apr 20;107(16):7610-5
pubmed: 20368413
FEBS Lett. 1999 Nov 12;461(1-2):63-7
pubmed: 10561497