COVLIAS 1.0

COVID lesions COVID-19 computed tomography ground-glass opacities hybrid deep learning segmentation

Journal

Diagnostics (Basel, Switzerland)
ISSN: 2075-4418
Titre abrégé: Diagnostics (Basel)
Pays: Switzerland
ID NLM: 101658402

Informations de publication

Date de publication:
21 May 2022
Historique:
received: 16 04 2022
revised: 18 05 2022
accepted: 19 05 2022
entrez: 28 5 2022
pubmed: 29 5 2022
medline: 29 5 2022
Statut: epublish

Résumé

Background: COVID-19 is a disease with multiple variants, and is quickly spreading throughout the world. It is crucial to identify patients who are suspected of having COVID-19 early, because the vaccine is not readily available in certain parts of the world. Methodology: Lung computed tomography (CT) imaging can be used to diagnose COVID-19 as an alternative to the RT-PCR test in some cases. The occurrence of ground-glass opacities in the lung region is a characteristic of COVID-19 in chest CT scans, and these are daunting to locate and segment manually. The proposed study consists of a combination of solo deep learning (DL) and hybrid DL (HDL) models to tackle the lesion location and segmentation more quickly. One DL and four HDL models—namely, PSPNet, VGG-SegNet, ResNet-SegNet, VGG-UNet, and ResNet-UNet—were trained by an expert radiologist. The training scheme adopted a fivefold cross-validation strategy on a cohort of 3000 images selected from a set of 40 COVID-19-positive individuals. Results: The proposed variability study uses tracings from two trained radiologists as part of the validation. Five artificial intelligence (AI) models were benchmarked against MedSeg. The best AI model, ResNet-UNet, was superior to MedSeg by 9% and 15% for Dice and Jaccard, respectively, when compared against MD 1, and by 4% and 8%, respectively, when compared against MD 2. Statistical tests—namely, the Mann−Whitney test, paired t-test, and Wilcoxon test—demonstrated its stability and reliability, with p < 0.0001. The online system for each slice was <1 s. Conclusions: The AI models reliably located and segmented COVID-19 lesions in CT scans. The COVLIAS 1.0Lesion lesion locator passed the intervariability test.

Identifiants

pubmed: 35626438
pii: diagnostics12051283
doi: 10.3390/diagnostics12051283
pmc: PMC9141749
pii:
doi:

Types de publication

Journal Article

Langues

eng

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Auteurs

Jasjit S Suri (JS)

Stroke Diagnostic and Monitoring Division, AtheroPoint™, Roseville, CA 95661, USA.
Advanced Knowledge Engineering Centre, GBTI, Roseville, CA 95661, USA.

Sushant Agarwal (S)

Advanced Knowledge Engineering Centre, GBTI, Roseville, CA 95661, USA.
Department of Computer Science Engineering, PSIT, Kanpur 209305, India.

Gian Luca Chabert (GL)

Department of Radiology, Azienda Ospedaliero Universitaria (A.O.U.), 09124 Cagliari, Italy.

Alessandro Carriero (A)

Department of Radiology, "Maggiore della Carità" Hospital, University of Piemonte Orientale (UPO), Via Solaroli 17, 28100 Novara, Italy.

Alessio Paschè (A)

Department of Radiology, Azienda Ospedaliero Universitaria (A.O.U.), 09124 Cagliari, Italy.

Pietro S C Danna (PSC)

Department of Radiology, Azienda Ospedaliero Universitaria (A.O.U.), 09124 Cagliari, Italy.

Luca Saba (L)

Department of Radiology, Azienda Ospedaliero Universitaria (A.O.U.), 09124 Cagliari, Italy.

Armin Mehmedović (A)

University Hospital for Infectious Diseases, 10000 Zagreb, Croatia.

Gavino Faa (G)

Department of Pathology, Azienda Ospedaliero Universitaria (A.O.U.), 09124 Cagliari, Italy.

Inder M Singh (IM)

Stroke Diagnostic and Monitoring Division, AtheroPoint™, Roseville, CA 95661, USA.

Monika Turk (M)

The Hanse-Wissenschaftskolleg Institute for Advanced Study, 27753 Delmenhorst, Germany.

Paramjit S Chadha (PS)

Stroke Diagnostic and Monitoring Division, AtheroPoint™, Roseville, CA 95661, USA.

Amer M Johri (AM)

Department of Medicine, Division of Cardiology, Queen's University, Kingston, ON K7L 3N6, Canada.

Narendra N Khanna (NN)

Department of Cardiology, Indraprastha APOLLO Hospitals, New Delhi 110076, India.

Sophie Mavrogeni (S)

Cardiology Clinic, Onassis Cardiac Surgery Center, 17674 Athens, Greece.

John R Laird (JR)

Heart and Vascular Institute, Adventist Health St. Helena, St Helena, CA 94574, USA.

Gyan Pareek (G)

Minimally Invasive Urology Institute, Brown University, Providence, RI 02912, USA.

Martin Miner (M)

Men's Health Center, Miriam Hospital, Providence, RI 02906, USA.

David W Sobel (DW)

Minimally Invasive Urology Institute, Brown University, Providence, RI 02912, USA.

Antonella Balestrieri (A)

Department of Radiology, Azienda Ospedaliero Universitaria (A.O.U.), 09124 Cagliari, Italy.

Petros P Sfikakis (PP)

Rheumatology Unit, National Kapodistrian University of Athens, 15772 Athens, Greece.

George Tsoulfas (G)

Department of Surgery, Aristoteleion University of Thessaloniki, 54124 Thessaloniki, Greece.

Athanasios D Protogerou (AD)

Cardiovascular Prevention and Research Unit, Department of Pathophysiology, National & Kapodistrian University of Athens, 15772 Athens, Greece.

Durga Prasanna Misra (DP)

Department of Immunology, Sanjay Gandhi Postgraduate Institute of Medical Sciences, Lucknow 226014, India.

Vikas Agarwal (V)

Department of Immunology, Sanjay Gandhi Postgraduate Institute of Medical Sciences, Lucknow 226014, India.

George D Kitas (GD)

Academic Affairs, Dudley Group NHS Foundation Trust, Dudley DY1 2HQ, UK.
Arthritis Research UK Epidemiology Unit, Manchester University, Manchester M13 9PL, UK.

Jagjit S Teji (JS)

Ann and Robert H. Lurie Children's Hospital of Chicago, Chicago, IL 60611, USA.

Mustafa Al-Maini (M)

Allergy, Clinical Immunology and Rheumatology Institute, Toronto, ON L4Z 4C4, Canada.

Surinder K Dhanjil (SK)

AtheroPoint LLC, Roseville, CA 95661, USA.

Andrew Nicolaides (A)

Vascular Screening and Diagnostic Centre, University of Nicosia Medical School, Nicosia 2408, Cyprus.

Aditya Sharma (A)

Division of Cardiovascular Medicine, University of Virginia, Charlottesville, VA 22908, USA.

Vijay Rathore (V)

AtheroPoint LLC, Roseville, CA 95661, USA.

Mostafa Fatemi (M)

Department of Physiology and Biomedical Engineering, Mayo Clinic College of Medicine and Science, Rochester, MN 55905, USA.

Azra Alizad (A)

Department of Radiology, Mayo Clinic College of Medicine and Science, Rochester, MN 55905, USA.

Pudukode R Krishnan (PR)

Neurology Department, Fortis Hospital, Bangalore 560076, India.

Ferenc Nagy (F)

Internal Medicine Department, University of Szeged, 6725 Szeged, Hungary.

Zoltan Ruzsa (Z)

Invasive Cardiology Division, University of Szeged, 6725 Szeged, Hungary.

Mostafa M Fouda (MM)

Department of Electrical and Computer Engineering, Idaho State University, Pocatello, ID 83209, USA.

Subbaram Naidu (S)

Electrical Engineering Department, University of Minnesota, Duluth, MN 55812, USA.

Klaudija Viskovic (K)

University Hospital for Infectious Diseases, 10000 Zagreb, Croatia.

Manudeep K Kalra (MK)

Department of Radiology, Massachusetts General Hospital, 55 Fruit Street, Boston, MA 02114, USA.

Classifications MeSH